Literature DB >> 8274653

Multiple hydration layers in cubic insulin crystals.

J Badger1.   

Abstract

Cubic insulin crystals contain approximately 30-A-diameter channels filled with aqueous solvent, providing a useful system in which to analyze hydration structure at a variety of distances from protein surfaces. Beginning with an atomic model for the protein and ordered water molecules, the density distribution in the solvent volume of the phasing model was iteratively refined to improve the fit of calculated structure factors with x-ray diffraction data. The free R value, which compares calculated structure factors with a subset of observed structure factors deliberately omitted from the refinement, was used to provide an objective confirmation of the effectiveness of the refinement procedure. Electron density maps of the solvent, computed using the solvent-refined phases and complete low-resolution diffraction data, reveal multiple hydration layers around the protein.

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Year:  1993        PMID: 8274653      PMCID: PMC1225891          DOI: 10.1016/S0006-3495(93)81220-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  10 in total

1.  Conformational changes in cubic insulin crystals in the pH range 7-11.

Authors:  O Gursky; J Badger; Y Li; D L Caspar
Journal:  Biophys J       Date:  1992-11       Impact factor: 4.033

2.  Structure of the pig insulin dimer in the cubic crystal.

Authors:  J Badger; M R Harris; C D Reynolds; A C Evans; E J Dodson; G G Dodson; A C North
Journal:  Acta Crystallogr B       Date:  1991-02-01

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Journal:  Nature       Date:  1976-02-19       Impact factor: 49.962

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Authors:  A H Narten; H A Levy
Journal:  Science       Date:  1969-08-01       Impact factor: 47.728

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Journal:  J Mol Biol       Date:  1988-08-05       Impact factor: 5.469

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Authors:  C C Blake; W C Pulford; P J Artymiuk
Journal:  J Mol Biol       Date:  1983-07-05       Impact factor: 5.469

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Authors:  E J Dodson; G G Dodson; A Lewitova; M Sabesan
Journal:  J Mol Biol       Date:  1978-11-05       Impact factor: 5.469

8.  Analysis of solvent structure in proteins using neutron D2O-H2O solvent maps: pattern of primary and secondary hydration of trypsin.

Authors:  A A Kossiakoff; M D Sintchak; J Shpungin; L G Presta
Journal:  Proteins       Date:  1992-03

9.  Water structure in cubic insulin crystals.

Authors:  J Badger; D L Caspar
Journal:  Proc Natl Acad Sci U S A       Date:  1991-01-15       Impact factor: 11.205

10.  Monovalent cation binding to cubic insulin crystals.

Authors:  O Gursky; Y Li; J Badger; D L Caspar
Journal:  Biophys J       Date:  1992-03       Impact factor: 4.033

  10 in total
  10 in total

1.  Is the first hydration shell of lysozyme of higher density than bulk water?

Authors:  Franci Merzel; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

Review 2.  Structure, dynamics and reactions of protein hydration water.

Authors:  Jeremy C Smith; Franci Merzel; Ana-Nicoleta Bondar; Alexander Tournier; Stefan Fischer
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-08-29       Impact factor: 6.237

3.  Decomposition of protein experimental compressibility into intrinsic and hydration shell contributions.

Authors:  Voichita M Dadarlat; Carol Beth Post
Journal:  Biophys J       Date:  2006-09-22       Impact factor: 4.033

4.  Structure of cubic insulin crystals in glucose solutions.

Authors:  B Yu; D L Caspar
Journal:  Biophys J       Date:  1998-01       Impact factor: 4.033

5.  Protein hydration in solution: experimental observation by x-ray and neutron scattering.

Authors:  D I Svergun; S Richard; M H Koch; Z Sayers; S Kuprin; G Zaccai
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-03       Impact factor: 11.205

Review 6.  Structure and dynamics of the water around myoglobin.

Authors:  G N Phillips; B M Pettitt
Journal:  Protein Sci       Date:  1995-02       Impact factor: 6.725

7.  A global model of the protein-solvent interface.

Authors:  V Lounnas; B M Pettitt; G N Phillips
Journal:  Biophys J       Date:  1994-03       Impact factor: 4.033

8.  Solvent-exposed tryptophans probe the dynamics at protein surfaces.

Authors:  G S Lakshmikanth; G Krishnamoorthy
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

9.  Cluster analysis of consensus water sites in thrombin and trypsin shows conservation between serine proteases and contributions to ligand specificity.

Authors:  P C Sanschagrin; L A Kuhn
Journal:  Protein Sci       Date:  1998-10       Impact factor: 6.725

10.  Disordered water within a hydrophobic protein cavity visualized by x-ray crystallography.

Authors:  B Yu; M Blaber; A M Gronenborn; G M Clore; D L Caspar
Journal:  Proc Natl Acad Sci U S A       Date:  1999-01-05       Impact factor: 11.205

  10 in total

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