Literature DB >> 20884853

Protein-ice interaction of an antifreeze protein observed with solid-state NMR.

Ansgar B Siemer1, Kuo-Ying Huang, Ann E McDermott.   

Abstract

NMR on frozen solutions is an ideal method to study fundamental questions of macromolecular hydration, because the hydration shell of many biomolecules does not freeze together with bulk solvent. In the present study, we present previously undescribed NMR methods to study the interactions of proteins with their hydration shell and the ice lattice in frozen solution. We applied these methods to compare solvent interaction of an ice-binding type III antifreeze protein (AFP III) and ubiquitin a non-ice-binding protein in frozen solution. We measured (1)H-(1)H cross-saturation and cross-relaxation to provide evidence for a molecular contact surface between ice and AFP III at moderate freezing temperatures of -35 °C. This phenomenon is potentially unique for AFPs because ubiquitin shows no such cross relaxation or cross saturation with ice. On the other hand, we detected liquid hydration water and strong water-AFP III and water-ubiquitin cross peaks in frozen solution using relaxation filtered (2)H and HETCOR spectra with additional (1)H-(1)H mixing. These results are consistent with the idea that ubiquitin is surrounded by a hydration shell, which separates it from the bulk ice. For AFP III, the water cross peaks indicate that only a portion of its hydration shell (i.e., at the ice-binding surface) is in contact with the ice lattice. The rest of AFP III's hydration shell behaves similarly to the hydration shell of non-ice-interacting proteins such as ubiquitin and does not freeze together with the bulk water.

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Year:  2010        PMID: 20884853      PMCID: PMC2955146          DOI: 10.1073/pnas.1009369107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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3.  Fluorescence microscopy evidence for quasi-permanent attachment of antifreeze proteins to ice surfaces.

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4.  The first proton NMR imaging of ice: stray-field imaging and relaxation studies.

Authors:  T G Nunes; E W Randall; G Guillot
Journal:  Solid State Nucl Magn Reson       Date:  2007-09-04       Impact factor: 2.293

5.  Solid-state NMR on a type III antifreeze protein in the presence of ice.

Authors:  Ansgar B Siemer; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2008-12-24       Impact factor: 15.419

6.  Structural rearrangements of membrane proteins probed by water-edited solid-state NMR spectroscopy.

Authors:  Christian Ader; Robert Schneider; Karsten Seidel; Manuel Etzkorn; Stefan Becker; Marc Baldus
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7.  Interfacial water at protein surfaces: wide-line NMR and DSC characterization of hydration in ubiquitin solutions.

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8.  Characterization of different water pools in solid-state NMR protein samples.

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Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

9.  Hydration of macromolecules.

Authors:  I D Kuntz; T S Brassfield; G D Law; G V Purcell
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Authors:  Vitali Tugarinov; Voula Kanelis; Lewis E Kay
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  15 in total

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2.  Effect of subdomain interactions on methyl group dynamics in the hydrophobic core of villin headpiece protein.

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3.  Anchored clathrate waters bind antifreeze proteins to ice.

Authors:  Christopher P Garnham; Robert L Campbell; Peter L Davies
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

4.  Cryogenic temperature effects and resolution upon slow cooling of protein preparations in solid state NMR.

Authors:  Arne H Linden; W Trent Franks; Ümit Akbey; Sascha Lange; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2011-08-09       Impact factor: 2.835

5.  Observation of ice-like water layers at an aqueous protein surface.

Authors:  Konrad Meister; Simona Strazdaite; Arthur L DeVries; Stephan Lotze; Luuk L C Olijve; Ilja K Voets; Huib J Bakker
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-02       Impact factor: 11.205

6.  Line-Broadening in Low-Temperature Solid-State NMR Spectra of Fibrils.

Authors:  Thomas Bauer; Claudio Dotta; Livia Balacescu; Julia Gath; Andreas Hunkeler; Anja Böckmann; Beat H Meier
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7.  Long-range protein-water dynamics in hyperactive insect antifreeze proteins.

Authors:  Konrad Meister; Simon Ebbinghaus; Yao Xu; John G Duman; Arthur DeVries; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-31       Impact factor: 11.205

8.  Conformational disorder of membrane peptides investigated from solid-state NMR line widths and line shapes.

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Journal:  J Phys Chem B       Date:  2011-08-18       Impact factor: 2.991

9.  Deuteron Quadrupolar Chemical Exchange Saturation Transfer (Q-CEST) Solid-State NMR for Static Powder Samples: Approach and Applications to Amyloid-β Fibrils.

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Journal:  Chemphyschem       Date:  2020-01-09       Impact factor: 3.102

Review 10.  Advances in studying protein disorder with solid-state NMR.

Authors:  Ansgar B Siemer
Journal:  Solid State Nucl Magn Reson       Date:  2020-01-12       Impact factor: 2.293

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