Literature DB >> 15306377

Protein hydration dynamics in solution: a critical survey.

Bertil Halle1.   

Abstract

The properties of water in biological systems have been studied for well over a century by a wide range of physical techniques, but progress has been slow and erratic. Protein hydration--the perturbation of water structure and dynamics by the protein surface--has been a particularly rich source of controversy and confusion. Our aim here is to critically examine central concepts in the description of protein hydration, and to assess the experimental basis for the current view of protein hydration, with the focus on dynamic aspects. Recent oxygen-17 magnetic relaxation dispersion (MRD) experiments have shown that the vast majority of water molecules in the protein hydration layer suffer a mere twofold dynamic retardation compared with bulk water. The high mobility of hydration water ensures that all thermally activated processes at the protein-water interface, such as binding, recognition and catalysis, can proceed at high rates. The MRD-derived picture of a highly mobile hydration layer is consistent with recent molecular dynamics simulations, but is incompatible with results deduced from intermolecular nuclear Overhauser effect spectroscopy, dielectric relaxation and fluorescence spectroscopy. It is also inconsistent with the common view of hydration effects on protein hydrodynamics. Here, we show how these discrepancies can be resolved.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15306377      PMCID: PMC1693401          DOI: 10.1098/rstb.2004.1499

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  65 in total

1.  Dielectric relaxation and solvation dynamics of water in complex chemical and biological systems.

Authors:  N Nandi; K Bhattacharyya; B Bagchi
Journal:  Chem Rev       Date:  2000-06-14       Impact factor: 60.622

2.  Is the first hydration shell of lysozyme of higher density than bulk water?

Authors:  Franci Merzel; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

3.  Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution.

Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

4.  Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations.

Authors:  R M Brunne; E Liepinsh; G Otting; K Wüthrich; W F van Gunsteren
Journal:  J Mol Biol       Date:  1993-06-20       Impact factor: 5.469

5.  Nuclear magnetic relaxation dispersion in protein solutions. I. Apotransferrin.

Authors:  S H Koenig; W E Schillinger
Journal:  J Biol Chem       Date:  1969-06-25       Impact factor: 5.157

6.  Kinetics of DNA hydration.

Authors:  V P Denisov; G Carlström; K Venu; B Halle
Journal:  J Mol Biol       Date:  1997-04-25       Impact factor: 5.469

7.  Cross relaxation and spin diffusion effects on the proton NMR of biopolymers in H2O. Solvent saturation and chemical exchange in superoxide dismutase.

Authors:  J D Stoesz; A G Redfield
Journal:  FEBS Lett       Date:  1978-07-15       Impact factor: 4.124

8.  Water dynamics in the large cavity of three lipid-binding proteins monitored by (17)O magnetic relaxation dispersion.

Authors:  Kristofer Modig; Martin Rademacher; Christian Lücke; Bertil Halle
Journal:  J Mol Biol       Date:  2003-09-26       Impact factor: 5.469

9.  The influence of a protein on water dynamics in its vicinity investigated by molecular dynamics simulation.

Authors:  R Abseher; H Schreiber; O Steinhauser
Journal:  Proteins       Date:  1996-07

10.  Water structure associated with proteins and its role in crystallization.

Authors:  M Frey
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01
View more
  95 in total

1.  Temperature dependence of lysozyme hydration and the role of elastic energy.

Authors:  Hai-Jing Wang; Alfred Kleinhammes; Pei Tang; Yan Xu; Yue Wu
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-03-31

2.  Crowding induces differences in the diffusion of thermophilic and mesophilic proteins: a new look at neutron scattering results.

Authors:  Enrique Marcos; Pau Mestres; Ramon Crehuet
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

3.  Probing water-protein contacts in a MMP-12/CGS27023A complex by nuclear magnetic resonance spectroscopy.

Authors:  Helena Kovacs; Tatiana Agback; Johan Isaksson
Journal:  J Biomol NMR       Date:  2012-04-15       Impact factor: 2.835

4.  Crystal structures, dynamics and functional implications of molybdenum-cofactor biosynthesis protein MogA from two thermophilic organisms.

Authors:  Shankar Prasad Kanaujia; Jeyaraman Jeyakanthan; Akeo Shinkai; Seiki Kuramitsu; Shigeyuki Yokoyama; Kanagaraj Sekar
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-12-21

5.  Protein-ice interaction of an antifreeze protein observed with solid-state NMR.

Authors:  Ansgar B Siemer; Kuo-Ying Huang; Ann E McDermott
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-30       Impact factor: 11.205

6.  Water-exclusion and liquid-structure forces in implicit solvation.

Authors:  Sergio A Hassan; Peter J Steinbach
Journal:  J Phys Chem B       Date:  2011-11-15       Impact factor: 2.991

7.  Molecular origin of time-dependent fluorescence shifts in proteins.

Authors:  Lennart Nilsson; Bertil Halle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-14       Impact factor: 11.205

8.  Cholesterol enhances surface water diffusion of phospholipid bilayers.

Authors:  Chi-Yuan Cheng; Luuk L C Olijve; Ravinath Kausik; Songi Han
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

9.  Specific and non-specific protein association in solution: computation of solvent effects and prediction of first-encounter modes for efficient configurational bias Monte Carlo simulations.

Authors:  Antonio Cardone; Harish Pant; Sergio A Hassan
Journal:  J Phys Chem B       Date:  2013-10-07       Impact factor: 2.991

10.  Down to atomic-scale intracellular water dynamics.

Authors:  Marion Jasnin; Martine Moulin; Martina Moulin; Michael Haertlein; Giuseppe Zaccai; Moeava Tehei
Journal:  EMBO Rep       Date:  2008-05-02       Impact factor: 8.807

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.