Literature DB >> 7757005

Structure and dynamics of the water around myoglobin.

G N Phillips1, B M Pettitt.   

Abstract

The interplay between simulations at various levels of hydration and experimental observables has led to a picture of the role of solvent in thermodynamics and dynamics of protein systems. One of the most studied protein-solvent systems is myoglobin, which serves as a paradigm for the development of structure-function relationships in many biophysical studies. We review here some aspects of the solvation of myoglobin and the resulting implications. In particular, recent theoretical and simulation studies unify much of the diverse set of experimental results on water near proteins.

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Year:  1995        PMID: 7757005      PMCID: PMC2143067          DOI: 10.1002/pro.5560040202

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  46 in total

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Authors:  J J WEISS
Journal:  Nature       Date:  1964-07-11       Impact factor: 49.962

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Authors:  H C WATSON; J C KENDREW
Journal:  Nature       Date:  1961-05-20       Impact factor: 49.962

3.  Cold denaturation of myoglobin.

Authors:  P L Privalov; V P Kutyshenko
Journal:  J Mol Biol       Date:  1986-08-05       Impact factor: 5.469

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Authors:  B M Fung
Journal:  Methods Enzymol       Date:  1986       Impact factor: 1.600

Review 5.  The passive electrical properties of biological systems: their significance in physiology, biophysics and biotechnology.

Authors:  R Pethig; D B Kell
Journal:  Phys Med Biol       Date:  1987-08       Impact factor: 3.609

6.  Multiple hydration layers in cubic insulin crystals.

Authors:  J Badger
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

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Authors:  F Parak; E W Knapp; D Kucheida
Journal:  J Mol Biol       Date:  1982-10-15       Impact factor: 5.469

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Authors:  M M Teeter
Journal:  Proc Natl Acad Sci U S A       Date:  1984-10       Impact factor: 11.205

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Authors:  H J Berendsen; W F Van Gunsteren; H R Zwinderman; R G Geurtsen
Journal:  Ann N Y Acad Sci       Date:  1986       Impact factor: 5.691

10.  Neutron diffraction study of carbonmonoxymyoglobin.

Authors:  X D Cheng; B P Schoenborn
Journal:  J Mol Biol       Date:  1991-07-20       Impact factor: 5.469

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  26 in total

1.  The dynamics of protein hydration water: a quantitative comparison of molecular dynamics simulations and neutron-scattering experiments.

Authors:  M Tarek; D J Tobias
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

2.  Residence times of water molecules in the hydration sites of myoglobin.

Authors:  V A Makarov; B K Andrews; P E Smith; B M Pettitt
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

3.  Apolar and polar solvation thermodynamics related to the protein unfolding process.

Authors:  Audun Bakk; Johan S Høye; Alex Hansen
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

4.  Is the first hydration shell of lysozyme of higher density than bulk water?

Authors:  Franci Merzel; Jeremy C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

5.  Gas-phase H/D exchange and collision cross sections of hemoglobin monomers, dimers, and tetramers.

Authors:  P John Wright; D J Douglas
Journal:  J Am Soc Mass Spectrom       Date:  2008-11-21       Impact factor: 3.109

6.  Role of Heme Pocket Water in Allosteric Regulation of Ligand Reactivity in Human Hemoglobin.

Authors:  Raymond M Esquerra; Bushra M Bibi; Pooncharas Tipgunlakant; Ivan Birukou; Jayashree Soman; John S Olson; David S Kliger; Robert A Goldbeck
Journal:  Biochemistry       Date:  2016-07-13       Impact factor: 3.162

7.  Incorporating dipolar solvents with variable density in Poisson-Boltzmann electrostatics.

Authors:  Cyril Azuara; Henri Orland; Michael Bon; Patrice Koehl; Marc Delarue
Journal:  Biophys J       Date:  2008-09-26       Impact factor: 4.033

8.  Hydrophobic regions on protein surfaces. Derivation of the solvation energy from their area distribution in crystallographic protein structures.

Authors:  F Eisenhaber
Journal:  Protein Sci       Date:  1996-08       Impact factor: 6.725

9.  Diffusion of solvent around biomolecular solutes: a molecular dynamics simulation study.

Authors:  V A Makarov; M Feig; B K Andrews; B M Pettitt
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

10.  Note: On the universality of proximal radial distribution functions of proteins.

Authors:  Bin Lin; B Montgomery Pettitt
Journal:  J Chem Phys       Date:  2011-03-14       Impact factor: 3.488

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