| Literature DB >> 35515262 |
Mingchang Hou1, Kunyu Jin1, Qingzhong Li1, Shufeng Liu2.
Abstract
A tetrel bond was characterized in the complexes of 1,4-diazabicyclo[2.2.2]octane (DABCO) with TH3X (T = C, Si, Ge; X= -Me, -H, -OH, -NH2, -F, -Cl, -Br, -I, -CN, -NO2). DABCO engages in a weak tetrel bond with CH3X but a stronger one with SiH3X and GeH3X. SiH3X is favorable to bind with DABCO relative to GeH3X, inconsistent with the magnitude of the σ-hole on the tetrel atom. The methyl group in the tetrel donor weakens the tetrel bond but an enhancing effect is found for the other substituents, particularly -NO2. The substitution effect is also related to the nature of the tetrel atom. The halogen substitution from F to I has a weakening effect in the CH3X complex but an enhancing effect in the SiH3X complex and a negligible effect in the GeH3X complex. The above abnormal results found in these complexes can be partly attributed to the charge transfer from the lone pair on the nitrogen atom of DABCO into the anti-bonding orbital σ*(T-X) of TH3X. The stability of both SiH3X and GeH3X complexes is primarily controlled by electrostatic interactions and polarization. This journal is © The Royal Society of Chemistry.Entities:
Year: 2019 PMID: 35515262 PMCID: PMC9064731 DOI: 10.1039/c9ra03351c
Source DB: PubMed Journal: RSC Adv ISSN: 2046-2069 Impact factor: 4.036
Fig. 1The structure of DABCO.
Fig. 2MEP maps of DABCO, SiH3F, CH4 and CH3Me. Color ranges are: red, greater than 12.5; yellow, between 12.5 and 0; green, between 0 and −12.5; blue, less than −12.5. All quantities are in kcal mol−1.
The most positive MEP (Vmax, kcal mol−1) on the σ-hole along the T–R bond in TH3X
| T = C |
| T = Si |
| T = Ge |
|
|---|---|---|---|---|---|
| X = CH3 | −2.2 | X = CH3 | 16.0 | X = CH3 | 15.7 |
| X = H | −2.1 | X = H | 22.1 | X = H | 21.0 |
| X = NH2 | 4.1 | X = NH2 | 22.5 | X = NH2 | 25.5 |
| X = OH | 12.0 | X = OH | 32.1 | X = OH | 36.8 |
| X = I | 16.3 | X = I | 38.5 | X = I | 41.0 |
| X = Br | 19.3 | X = Br | 40.7 | X = Br | 44.3 |
| X = Cl | 20.3 | X = Cl | 41.7 | X = Cl | 45.9 |
| X = F | 24.1 | X = F | 45.0 | X = F | 50.8 |
| X = CN | 26.5 | X = CN | 47.1 | X = CN | 48.1 |
| X = NO2 | 34.9 | X = NO2 | 61.8 | X = NO2 | 63.1 |
Binding distance (R, Å) in the TH3X complexes
| T = C |
| T = Si |
| T = Ge |
|
|---|---|---|---|---|---|
| X = CH3 | — | X = CH3 | 2.674 | X = CH3 | 2.773 |
| X = H | — | X = H | 2.657 | X = H | 2.787 |
| X = NH2 | 3.291 | X = NH2 | 2.423 | X = NH2 | 2.550 |
| X = OH | 3.147 | X = OH | 2.304 | X = OH | 2.417 |
| X = I | 3.073 | X = I | 2.179 | X = I | 2.313 |
| X = Br | 3.036 | X = Br | 2.189 | X = Br | 2.314 |
| X = Cl | 3.058 | X = Cl | 2.200 | X = Cl | 2.317 |
| X = F | 3.013 | X = F | 2.222 | X = F | 2.325 |
| X = CN | 3.163 | X = CN | 2.247 | X = CN | 2.404 |
| X = NO2 | 3.029 | X = NO2 | 2.122 | X = NO2 | 2.241 |
Interaction energy (ΔE, kcal mol−1) corrected for BSSE and ZPE in the TH3X complexes
| T = C | Δ | T = Si | Δ | T = Ge | Δ |
|---|---|---|---|---|---|
| X = CH3 | — | X = CH3 | −3.7 | X = CH3 | −2.7 |
| X = H | — | X = H | −3.7 | X = H | −2.7 |
| X = NH2 | −0.9 | X = NH2 | −7.2 | X = NH2 | −5.5 |
| X = OH | −1.2 | X = OH | −11.2 | X = OH | −9.1 |
| X = I | −1.7 | X = I | −18.4 | X = I | −13.7 |
| X = Br | −1.8 | X = Br | −18.1 | X = Br | −13.9 |
| X = Cl | −2.0 | X = Cl | −17.5 | X = Cl | −13.9 |
| X = F | −2.0 | X = F | −16.4 | X = F | −13.7 |
| X = CN | −2.2 | X = CN | −14.9 | X = CN | −10.4 |
| X = NO2 | −2.7 | X = NO2 | −25.0 | X = NO2 | −18.9 |
Fig. 3AIM diagram of DABCO⋯GeH3NO2.
Electron density (ρ, a.u.), its Laplacian (∇2ρ, a.u.), and total energy density (H, a.u.) at the intermolecular BCP in the TH3X complexes
| T = C | T = Si | T = Ge | |||||||
|---|---|---|---|---|---|---|---|---|---|
|
| ∇2 |
|
| ∇2 |
|
| ∇2 |
| |
| X = CH3 | — | — | — | 0.024 | 0.042 | −0.003 | 0.022 | 0.052 | −0.001 |
| X = H | — | — | — | 0.025 | 0.041 | −0.004 | 0.024 | 0.050 | −0.002 |
| X = NH2 | 0.005 | 0.023 | 0.001 | 0.035 | 0.047 | −0.010 | 0.035 | 0.047 | −0.010 |
| X = OH | 0.008 | 0.029 | 0.001 | 0.042 | 0.063 | −0.015 | 0.041 | 0.100 | −0.007 |
| X = I | 0.009 | 0.034 | 0.002 | 0.048 | 0.137 | −0.014 | 0.048 | 0.136 | −0.010 |
| X = Br | 0.010 | 0.035 | 0.002 | 0.050 | 0.102 | −0.018 | 0.051 | 0.119 | −0.012 |
| X = Cl | 0.011 | 0.033 | 0.002 | 0.050 | 0.096 | −0.018 | 0.050 | 0.119 | −0.012 |
| X = F | 0.009 | 0.037 | 0.002 | 0.046 | 0.090 | −0.004 | 0.049 | 0.119 | −0.011 |
| X = CN | 0.008 | 0.029 | 0.001 | 0.046 | 0.072 | −0.017 | 0.043 | 0.100 | −0.008 |
| X = NO2 | 0.010 | 0.034 | 0.002 | 0.056 | 0.144 | −0.019 | 0.059 | 0.137 | −0.016 |
Charge transfer (CT, e) and second-order perturbation energies (E(2), kcal mol−1) in the TH3X complexesa
| CT |
|
| |||||||
|---|---|---|---|---|---|---|---|---|---|
| T = C | T = Si | T = Ge | T = C | T = Si | T = Ge | T = C | T = Si | T = Ge | |
| X = CH3 | — | 0.038 | 0.030 | — | 8.0 | 7.3 | — | 2.7 | 2.3 |
| X = H | — | 0.037 | 0.027 | — | 7.5 | 6.3 | — | 2.6 | 2.2 |
| X = NH2 | 0.003 | 0.064 | 0.051 | 0.5 | 14.5 | 12.7 | — | 5.7 | 4.5 |
| X = OH | 0.003 | 0.083 | 0.071 | 1.1 | 19.1 | 17.1 | — | 7.8 | 6.5 |
| X = I | 0.004 | 0.121 | 0.100 | 1.6 | 31.0 | 27.5 | — | 10.3 | 8.4 |
| X = Br | 0.005 | 0.118 | 0.101 | 1.8 | 28.7 | 26.2 | — | 10.1 | 8.3 |
| X = Cl | 0.005 | 0.113 | 0.099 | 1.7 | 27.1 | 24.8 | — | 9.9 | 8.2 |
| X = F | 0.005 | 0.098 | 0.089 | 2.1 | 23.0 | 21.2 | — | 9.0 | 7.9 |
| X = CN | 0.002 | 0.105 | 0.081 | 0.8 | 22.3 | 18.1 | — | 9.1 | 6.7 |
| X = NO2 | 0.005 | 0.140 | 0.122 | 2.0 | 33.6 | 30.9 | — | 12.0 | 10.3 |
E 1 (2) and E2(2) correspond to the Lp(N) → σ*(T–R) and Lp(N) → σ*(T–H) orbital interactions, respectively.
Fig. 4Variation of three attractive terms (Eele, Epol, and Edisp) on the substituents.