Literature DB >> 26118675

The bright future of unconventional σ/π-hole interactions.

Antonio Bauzá1, Tiddo J Mooibroek2, Antonio Frontera3.   

Abstract

Non-covalent interactions play a crucial role in (supramolecular) chemistry and much of biology. Supramolecular forces can indeed determine the structure and function of a host-guest system. Many sensors, for example, rely on reversible bonding with the analyte. Natural machineries also often have a significant non-covalent component (e.g. protein folding, recognition) and rational interference in such 'living' devices can have pharmacological implications. For the rational design/tweaking of supramolecular systems it is helpful to know what supramolecular synthons are available and to understand the forces that make these synthons stick to one another. In this review we focus on σ-hole and π-hole interactions. A σ- or π-hole can be seen as positive electrostatic potential on unpopulated σ* or π(() *()) orbitals, which are thus capable of interacting with some electron dense region. A σ-hole is typically located along the vector of a covalent bond such as XH or XHlg (X=any atom, Hlg=halogen), which are respectively known as hydrogen and halogen bond donors. Only recently it has become clear that σ-holes can also be found along a covalent bond with chalcogen (XCh), pnictogen (XPn) and tetrel (XTr) atoms. Interactions with these synthons are named chalcogen, pnigtogen and tetrel interactions. A π-hole is typically located perpendicular to the molecular framework of diatomic π-systems such as carbonyls, or conjugated π-systems such as hexafluorobenzene. Anion-π and lone-pair-π interactions are examples of named π-hole interactions between conjugated π-systems and anions or lone-pair electrons respectively. While the above nomenclature indicates the distinct chemical identity of the supramolecular synthon acting as Lewis acid, it is worth stressing that the underlying physics is very similar. This implies that interactions that are now not so well-established might turn out to be equally useful as conventional hydrogen and halogen bonds. In summary, we describe the physical nature of σ- and π-hole interactions, present a selection of inquiries that utilise σ- and π-holes, and give an overview of analyses of structural databases (CSD/PDB) that demonstrate how prevalent these interactions already are in solid-state structures.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  non-covalent interactions; supramolecular chemistry; π-hole; σ-hole

Year:  2015        PMID: 26118675     DOI: 10.1002/cphc.201500314

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  55 in total

1.  Cooperative effects between halogen bonds and pnicogen bonds in XBr∙∙∙OFH2P∙∙∙NH3 (X = F, Cl, CN, NC, OH, and NO2) complexes.

Authors:  Qiang Zhao
Journal:  J Mol Model       Date:  2015-12-09       Impact factor: 1.810

2.  On the ability of pnicogen atoms to engage in both σ and π-hole complexes. Heterodimers of ZF2C6H5 (Z = P, As, Sb, Bi) and NH3.

Authors:  Wiktor Zierkiewicz; Mariusz Michalczyk; Rafał Wysokiński; Steve Scheiner
Journal:  J Mol Model       Date:  2019-05-08       Impact factor: 1.810

3.  Theoretical study of noncovalent interactions in XCN···YO2H (X = F, Cl, Br, I; Y = P, As, Sb) complexes.

Authors:  Qiang Zhao
Journal:  J Mol Model       Date:  2017-05-12       Impact factor: 1.810

4.  A Chalcogen-Bonding Cascade Switch for Planarizable Push-Pull Probes.

Authors:  Mariano Macchione; Antoine Goujon; Karolina Strakova; Heorhii V Humeniuk; Giuseppe Licari; Emad Tajkhorshid; Naomi Sakai; Stefan Matile
Journal:  Angew Chem Int Ed Engl       Date:  2019-09-20       Impact factor: 15.336

5.  Hemiaminal route for the formation of interstellar glycine: a computational study.

Authors:  Zanele P Nhlabatsi; Priya Bhasi; Sanyasi Sitha
Journal:  J Mol Model       Date:  2019-11-09       Impact factor: 1.810

Review 6.  Transition Metal Catalysis Controlled by Hydrogen Bonding in the Second Coordination Sphere.

Authors:  Joost N H Reek; Bas de Bruin; Sonja Pullen; Tiddo J Mooibroek; Alexander M Kluwer; Xavier Caumes
Journal:  Chem Rev       Date:  2022-05-20       Impact factor: 72.087

Review 7.  Metal Centers as Nucleophiles: Oxymoron of Halogen Bond-Involving Crystal Engineering.

Authors:  Daniil M Ivanov; Nadezhda A Bokach; Vadim Yu Kukushkin; Antonio Frontera
Journal:  Chemistry       Date:  2021-10-29       Impact factor: 5.020

8.  Cyclic Thiosulfonates for Thiol-Mediated Uptake: Cascade Exchangers, Transporters, Inhibitors.

Authors:  Takehiro Kato; Bumhee Lim; Yangyang Cheng; Anh-Tuan Pham; John Maynard; Dimitri Moreau; Amalia I Poblador-Bahamonde; Naomi Sakai; Stefan Matile
Journal:  JACS Au       Date:  2022-03-22

9.  The pnictogen bond: a quantitative molecular orbital picture.

Authors:  Lucas de Azevedo Santos; Trevor A Hamlin; Teodorico C Ramalho; F Matthias Bickelhaupt
Journal:  Phys Chem Chem Phys       Date:  2021-06-30       Impact factor: 3.676

10.  Anion binding properties of a hollow PdL-cage.

Authors:  Brian J J Timmer; Tiddo J Mooibroek
Journal:  Chem Commun (Camb)       Date:  2021-07-20       Impact factor: 6.222

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