Literature DB >> 19586091

Energy decomposition analysis of covalent bonds and intermolecular interactions.

Peifeng Su1, Hui Li.   

Abstract

An energy decomposition analysis method is implemented for the analysis of both covalent bonds and intermolecular interactions on the basis of single-determinant Hartree-Fock (HF) (restricted closed shell HF, restricted open shell HF, and unrestricted open shell HF) wavefunctions and their density functional theory analogs. For HF methods, the total interaction energy from a supermolecule calculation is decomposed into electrostatic, exchange, repulsion, and polarization terms. Dispersion energy is obtained from second-order Møller-Plesset perturbation theory and coupled-cluster methods such as CCSD and CCSD(T). Similar to the HF methods, Kohn-Sham density functional interaction energy is decomposed into electrostatic, exchange, repulsion, polarization, and dispersion terms. Tests on various systems show that this algorithm is simple and robust. Insights are provided by the energy decomposition analysis into H(2), methane C-H, and ethane C-C covalent bond formation, CH(3)CH(3) internal rotation barrier, water, ammonia, ammonium, and hydrogen fluoride hydrogen bonding, van der Waals interaction, DNA base pair formation, BH(3)NH(3) and BH(3)CO coordinate bond formation, Cu-ligand interactions, as well as LiF, LiCl, NaF, and NaCl ionic interactions.

Entities:  

Year:  2009        PMID: 19586091     DOI: 10.1063/1.3159673

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  76 in total

1.  The assessment and application of an approach to noncovalent interactions: the energy decomposition analysis (EDA) in combination with DFT of revised dispersion correction (DFT-D3) with Slater-type orbital (STO) basis set.

Authors:  Wei Gao; Huajie Feng; Xiaopeng Xuan; Liuping Chen
Journal:  J Mol Model       Date:  2012-05-29       Impact factor: 1.810

2.  Theoretical study of the cooperative effects between the triel bond and the pnicogen bond in BF3···NCXH2···Y (X = P, As, Sb; Y = H2O, NH3) complexes.

Authors:  Ming-Xiu Liu; Hong-Ying Zhuo; Qing-Zhong Li; Wen-Zuo Li; Jian-Bo Cheng
Journal:  J Mol Model       Date:  2015-12-16       Impact factor: 1.810

3.  CNXeCl and CNXeBr species as halogen bond donors: a quantum chemical study on the structure, properties, and nature of halogen···nitrogen interactions.

Authors:  Mehdi D Esrafili; Parisa Juyban
Journal:  J Mol Model       Date:  2014-03-29       Impact factor: 1.810

4.  Dispersion interactions between urea and nucleobases contribute to the destabilization of RNA by urea in aqueous solution.

Authors:  Koushik Kasavajhala; Swetha Bikkina; Indrajit Patil; Alexander D MacKerell; U Deva Priyakumar
Journal:  J Phys Chem B       Date:  2015-02-23       Impact factor: 2.991

5.  Revealing substitution effects on the strength and nature of halogen-hydride interactions: a theoretical study.

Authors:  Mehdi D Esrafili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-06-23       Impact factor: 1.810

6.  Competition and interplay between the lithium bonding and hydrogen bonding: R₃C···HY···LiY and R₃C···LiY···HY triads as a working model (R=H, CH₃; Y=CN, NC).

Authors:  Mohammad Solimannejad; Zahra Rezaei; Mehdi D Esrafili
Journal:  J Mol Model       Date:  2013-11       Impact factor: 1.810

7.  Cooperativity between fluorine-centered halogen bonds: investigation of substituent effects.

Authors:  Mehdi D Esrafili; Mehdi D Esraili; Fariba Mohammadian-Sabet; Parvin Esmailpour; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2013-10-27       Impact factor: 1.810

8.  Theoretical investigations into the intermolecular hydrogen-bonding interactions of N-(hydroxymethyl)acetamide dimers.

Authors:  Hai-Fei Tang; Hua Zhong; Ling-Ling Zhang; Ming-Xing Gong; Shu-Qin Song; Qing-Ping Tian
Journal:  J Mol Model       Date:  2018-05-31       Impact factor: 1.810

9.  Insights into the strength and nature of carbene···halogen bond interactions: a theoretical perspective.

Authors:  Mehdi D Esrafili; Nafiseh Mohammadirad
Journal:  J Mol Model       Date:  2013-03-02       Impact factor: 1.810

10.  DFT studies of imino and thiocarbonyl ligands with the pentaaqua Mg²⁺ cation: affinity and associated parameters.

Authors:  Leonardo Moreira da Costa; Glaucio Braga Ferreira; José Walkimar de M Carneiro
Journal:  J Mol Model       Date:  2013-03-28       Impact factor: 1.810

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