| Literature DB >> 34072523 |
Chang Sun1, Peter Kovacs1, Esther Guiu-Jurado1,2.
Abstract
Preferential fat accumulation in visceral vs. subcutaneous depots makes obese individuals more prone to metabolic complications. Body fat distribution (FD) is regulated by genetics. FD patterns vary across ethnic groups independent of obesity. Asians have more and Africans have less visceral fat compared with Europeans. Consequently, Asians tend to be more susceptible to type 2 diabetes even with lower BMIs when compared with Europeans. To date, genome-wide association studies (GWAS) have identified more than 460 loci related to FD traits. However, the majority of these data were generated in European populations. In this review, we aimed to summarize recent advances in FD genetics with a focus on comparisons between European and non-European populations (Asians and Africans). We therefore not only compared FD-related susceptibility loci identified in three ethnicities but also discussed whether known genetic variants might explain the FD pattern heterogeneity across different ancestries. Moreover, we describe several novel candidate genes potentially regulating FD, including NID2, HECTD4 and GNAS, identified in studies with Asian populations. It is of note that in agreement with current knowledge, most of the proposed FD candidate genes found in Asians belong to the group of developmental genes.Entities:
Keywords: GWAS; body fat distribution; genetics
Mesh:
Year: 2021 PMID: 34072523 PMCID: PMC8228180 DOI: 10.3390/genes12060841
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Studies conducted in a European cohort.
| Study Type | Publication Year | Sample Size | Male/Female | Cohort Age Mean (SD) | Traits | Criteria for Discovery c | N° of Variants d (Discovery Stage) | Criteria for Replication e | N° of Variants f (Replication Stage) | N° of Sexual Dimorphism Variants | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
| GWAS | 2009 | 140,644 (Dis a: 38,580 European; Rep b: 102,064 European) | NA | 55.73 (9.67) | WC | WC/WHR, | 26 | 2 | NA | [ | |
| WHR | 1 | NA | |||||||||
| Meta-analysis GWAS | 2010 | 190,803 (Dis a: 77,167 European; Rep b: 113,636 European) | 82,483/108,979 | NA | WHR | 16 | 14 | 7 | [ | ||
| Meta-analysis GWAS | 2015 | 210,088 (Dis a: 142,762 European; Rep b: 67,326 European) | 95,379/114,709 | 50 (10.3) | WHRadjBMI | NA | NA | 49 | 20 | [ | |
| Meta-analysis GWAS | 2015 | 320,485 Europeans | 51,625/60,654 | <=50 | WHRadjBMI | NA | 44 | 44 | [ | ||
| 90,988/106,622 | >50 | ||||||||||
| Meta-analysis GWAS | 2018 | 663,598 Europeans | 206,951/245,351 * | 57 (8) * | WHR | 202 | NA | NA | NA | [ | |
| 660,648 Europeans | WHRadjBMI | ||||||||||
| Meta-analysis GWAS | 2019 | 694,649 Europeans | NA | NA | WHRadjBMI | 346 | NA | NA | 105 | [ | |
| GWAS | 2017 | 239,856 Europeans (Dia a: 33,811, Rep b: 206,045) | 123,766/116,090 | 51.4 | WHRadjBMI | 85 | 1 | 3 | [ | ||
| 54,693 Europeans (Dia a: 34,088, Rep b: 206,053) | 28,276/26,417 | 51.4 | WHR | 80 | 1 | 0 | |||||
| 67,767 Europeans (Dia a: 47,095, Rep b: 206,723) | 34,494/33,273 | 52 | WCadjBMI | 139 | 7 | 3 | |||||
| 68,267 Europeans (Dia a: 47,593, Rep b: 20,6737) | 33,792/34,475 | 50.1 | WC | 118 | 12 | 5 | |||||
| 54,595 Europeans (Dia a: 34,004, Rep b: 205,909) | 28,008/26,587 | 51.4 | HIP | 114 | 7 | 2 |
NA: Not applicable. * This study participants included two parts: Ukbiobank and GIANT—the radio of sex and age only showed in Ukbiobank participants; a Discovery stage sample; b Replication stage sample; c Criteria for discovery stage; d Number of variants found in the discovery stage by c criteria; e Criteria for replication in Asian study (also as a criterion for other types of studies); f Number of variants found in the replication stage by e criteria.
Figure 1Overlap of reported loci associated with fat distribution traits in Europeans based on p < 10−8; Asians and Africans are based on p < 10−6.
Studies conducted in cohorts of Asians and Africans.
| Study Type | Publication Year | Sample Size | Male/Female | Cohort Age Mean (SD) | Traits | Criteria for Discovery | N° of Variants d (Discovery Stage) | Criteria for Replication e | N° of Variants f (Replication Stage) | N° of Variants Replicated from g | N° of Variants Successfully Replicated from g | N° of Sexual Dimorphism Variants | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| GWAS | 2009 | 16,703 (Dis a: 8842 East Asian; Rep b: 7861 East Asian) | 7397/9306 | 54.4 (8.4) | WHR | 2 | 1 | NA | NA | NA | [ | ||
| GWAS | 2016 | 73,596 East Asian (Dis: 48,312, Rep: 25,284) | 31,570/42,026 | 54.4 (9) | WHRadjBMI | 33 | 2 | 60 | 11 (1 × 10−3) | 3 (10 from h) | [ | ||
| WHRnoBMI | 33 | 0 | 13 (1 × 10−3) | ||||||||||
| 2016 | 78,336 East Asian (Dis: 53,052, Rep: 25,284) | 36,310/42,026 | 54.4 (9) | WCadjBMI | 33 | 4 | 60 | 7 (1 × 10−3) | |||||
| WCnoBMI | 33 | 3 | 60 | 15 (1 × 10−3) | |||||||||
| GWAS | 2016 | 12,240 (Dis a: 10,318 South Asian; Rep b: 1922 South Asian) | 9825/2415 | 50.5 (11.2) | WHR | 0 | 0 | 48 | 4 ( | 2 (11from known WHR) | [ | ||
| Exome-Wide Association Study | 2016 | 2637 South Asian | 1798/839 | 51.6 (10.1) | WHR | 0 | 0 | NA | NA | NA | [ | ||
| GWAS | 2018 | 274 East Asian (139 dizygotic twin pairs) | NA | over 30 | BMI-WHR | 26 | NA | NA | NA | NA | NA | [ | |
| GWAS | 2008 | 14,639 (Dis a: 2684 South Asian, Rep b: 7394 South Asian and 4561 European) | 9954/4685 | 51.1 (11) | WC | 31 | 4 | NA | NA | NA | [ | ||
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| GWAS | 2013 | 33,738 (Dis a: 23,564, Rep b: 19,744 African American or Afro-Caribbean) | 9224/24,514 | 56.1 (9.5) | WC | 25 | 1 | NA | NA | NA | [ | ||
| 27,489 (Dis a: 19,744, Rep b: 7745 African American or Afro-Caribbean) | 6446/21,043 | 55.1 (9.7) | WHR | 1 | 14 | 6 | 1 | ||||||
| Fine mapping | 2014 | 19,744 African American | 10,318/9426 | 51.4 (9.4) | WHR | NA | NA | NA | 14 | 12 | NA | [ | |
| Fine mapping | 2016 | 15,981 African American | 3884/12,097 | 54.1 (7.8) | WC | NA | NA | NA | 17 | 0 | 0 | [ | |
| WHR | NA | NA | NA | 17 | 8 | 5 | |||||||
NA: Not applicable; a Discovery stage sample; b Replication stage sample; c Criteria for discovery stage; d Number of variants found in the discovery stage by c criteria; e Criteria for replication in Asian study (also as a criterion for other types of studies); f Number of variants found in the replication stage by e criteria; g European GWAS including Heid et al. 2010 [19], Shungin et al. 2015 [20].
Figure 2Risk allele frequency and effect size of FD-related loci in European and Asian populations. Risk allele frequency and effect size of fat distribution-related susceptibility loci with genome association significant p value in European and Asian cohorts. Fat distribution-related loci are shown in this figure with a p < 5 × 10−8 in both cohorts. P values and effect size are according to the reference studies reported in (Supplementary Table S1). The allele frequency is based on the 1000 Genomes Project (1KGP).
Fat distribution traits susceptibility loci identified (p < 5.0 × 10−6) in cohorts of Asian and African ancestries.
| SNP | Candidate Gene(s) a | Chr b | Allele c ALT/REF d | RAF e, f | ß-Estimates c (SE) e | Reported Traits g | Reference | Explained Variance (%) f | |
|---|---|---|---|---|---|---|---|---|---|
| rs1982963 |
| 14 | A/G | 0.85 | 0.048 (0.012) |
| WHRadjBMI | [ | 0.059 |
| rs10051787 |
| 5 | C/T | 0.59 | −0.04 (0.012) |
| WC | [ | 0.078 |
| rs2074356 |
| 12 | A/G | 0.13 | 0.006 (0.002) |
| WHR | [ | 0.001 |
| rs5020946 |
| 6 | T/G | 0.35 | 0.031 (0.01) |
| WHRadjBMI | [ | 0.044 |
| rs12970134 |
| 18 | A/G | 0.32 | NA |
| WC | [ | NA |
| rs3809128 |
| 12 | T/C | 0.16 | −0.037 (0.012) |
| WCadjBMI | [ | 0.037 |
| rs1868673 |
| 3 | C/A | 0.40 | −0.044 (0.016) |
| WC | [ | 0.093 |
| rs368123 |
| 6 | G/A | 0.40 | 0.032 (0.0129) |
| WC | [ | 0.049 |
| rs2057291 |
| 20 | G/A | 0.77 | 0.025 (0.01) |
| WCadjBMI | [ | 0.022 |
| rs4912314 |
| 1 | T/C | 0.24 | 0.029 (0.012) | 3.0 × 10−7 | WHRadjBMI | [ | NA |
| rs2025924 |
| 13 | C/T | NA | NA | 4.0 × 10−7 | WHR | [ | NA |
| rs3100776 |
| 2 | C/T | 0.47 | 0.017 (0.011) | 4.0 × 10−7 | WCadjBMI | [ | NA |
| rs11103390 |
| 9 | C/T | 0.25 | 0.017 (0.006) | 5.0 × 10−7 | WCadjBMI | [ | NA |
| rs1507456 |
| 8 | C/T | NA | NA | 7.0 × 10−7 | WHR | [ | NA |
| rs17197710 |
| 11 | C/T | 0.05 | −0.06 (0.024) | 8.0 × 10−7 | WHRadjBMI | [ | NA |
| rs12227147 |
| 12 | A/T | NA | NA | 1.0 × 10−6 | WHR | [ | NA |
| rs139256956 |
| 19 | C/A | 0.03 | −0.25 (0.1) | 1.0 × 10−6 | WHRadjBMI | [ | NA |
| rs57561811 |
| 14 | C/T | 0.25 | −0.07 (0.02) | 2.0 × 10−6 | WHRadjBMI | [ | NA |
| rs35316183 |
| 5 | A/G | NA | NA | 3.0 × 10−6 | WHR | [ | NA |
| rs17178527 |
| 6 | A/G | NA | NA | 3.0 × 10−6 | WC | [ | NA |
| rs79817709 |
| 19 | T/G | NA | NA | 5.0 × 10−6 | WHR | [ | NA |
| rs4667458 |
| 2 | G/A | NA | NA | 5.0 × 10−6 | WC | [ | NA |
|
| |||||||||
| rs2075064 |
| 9 | T/C | 0.07 | −0.07 (0.01) |
| WCadjBMI | [ | 0.067 |
| rs6867983 |
| 5 | T/C | 0.24 | −0.09 (0.02) | 1.4 × 10−7 | WC_men | [ | NA |
| rs7601155 |
| 2 | T/C | 0.16 | 0.06 (0.05) | 1.7 × 10−7 | WCadjBMI | [ | NA |
| rs17213965 |
| 16 | T/C | 0.16 | 0.12 (0.02) | 8.8 × 10−7 | WHRadjBMI_men | [ | NA |
| rs11777345 |
| 8 | G/C | 0.08 | −0.19 (0.04) | 3.2 × 10−6 | WHRadjBMI_men | [ | NA |
| rs1345301 |
| 2 | G/A | 0.19 | −0.08 (0.02) | 4.6 × 10−6 | WC_men | [ | NA |
| rs2570467 |
| 5 | G/A | 0.11 | 0.1 (0.02) | 1.2 × 10−6 | WC_men | [ | NA |
NA: Not applicable. a Predicted gene is reported in reference studies. b Chromosomes are based on NCBI Build154 (GRCh38). c Alternative alleles were treated as effective alleles. d The allele frequency is based on the 1000 Genomes Project (1KGP). e ‘Standard Error’ according to reference studies reported. f ‘Explained variance’ is the variance explained by each reported variant using the formula which uses the allele frequency (f) estimated in GWAS and estimates of the additive effect (ß) in meta-analysis: Explained variance = ß2 (1-f)2f [93]. To estimate the additive explained variance of 22 newly identified FD-related loci in the Asian population, the explained variance of each individual was combined and was 0.104% of WHR (including WHR adjusted for BMI) and 0.279% of WC (including WC adjusted for BMI). g The reported traits are according to reference. Bold p-value indicates statistical significance at GWAS level.