| Literature DB >> 22044751 |
Meredith C Foster1, Qiong Yang, Shih-Jen Hwang, Udo Hoffmann, Caroline S Fox.
Abstract
BACKGROUND: Ectopic fat accumulation in the renal sinus is associated with chronic kidney disease and hypertension. The genetic contributions to renal sinus fat accumulation in humans have not been well characterized.Entities:
Mesh:
Year: 2011 PMID: 22044751 PMCID: PMC3243045 DOI: 10.1186/1471-2350-12-148
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Study sample characteristics by sex.
| Women | Men | |
|---|---|---|
| n = 1512 | n = 1466 | |
| Age (years) | 52 ± 10 | 51 ± 11 |
| Renal sinus fat (cm2)* | 0.20 [0.05, 0.45] | 0.48 [0.21, 0.95] |
| Body Mass Index (kg/m2) | 27.0 ± 5.9 | 28.3 ± 4.6 |
| Abdominal visceral adipose tissue (cm3) | 1361 ± 836 | 2257 ± 1047 |
| Obesity (%) | 381 (25.2%) | 409 (27.9%) |
| Hypertension (%) | 405 (26.8%) | 475 (32.4%) |
| Diabetes (%) | 75 (5.0%) | 100 (6.8%) |
| Chronic Kidney Disease (%) | 60 (4.0%) | 36 (2.5%) |
| Current Smoking (%) | 188 (12.4%) | 206 (14.1%) |
Continuous characteristics are presented as mean ± standard deviation and dichotomous characteristics are presented as N (%), unless otherwise noted.
* Renal sinus fat presented as median [25th percentile, 75th percentile]
Estimated heritability (h2) of renal sinus fat in the Framingham Offspring and Third Generation Cohorts
| Whole Sample* | Women* | Men* | ||||
|---|---|---|---|---|---|---|
| Renal sinus fat phenotype | h2 | Standard | h2 | Standard | h2 | Standard |
| Age-adjusted** | 0.39 | 0.04 | 0.47 | 0.08 | 0.51 | 0.08 |
| Age-BMI adjusted** | 0.39 | 0.04 | 0.44 | 0.08 | 0.49 | 0.08 |
| Age-VAT adjusted** | 0.40 | 0.04 | 0.43 | 0.08 | 0.55 | 0.08 |
Abbreviations: BMI = body mass index; VAT = abdominal visceral adipose tissue
* Whole sample N = 2946; women only sample N = 1489; men only sample N = 1457
** All p-value < 0.0001
Figure 1Renal sinus fat genome-wide association analysis results in the overall sample. (a) Quantile-quantile plot for the genome-wide association analysis of renal sinus fat, adjusted for age, sex, and BMI. (b) Manhattan plot of results from the genome-wide association analysis of renal sinus fat, adjusted for age, sex, and BMI. The dotted line represents a -log p-value threshold of 5 × 10-8.
Top 20 independent* SNPs associated with renal sinus fat
| SNP | Chr | Position | Closest Gene | Effect | Effect | Imputation | P | β |
|---|---|---|---|---|---|---|---|---|
| rs10744391 | 12 | 127890891 | A | 0.29 | 0.67 | 1.2E-06 | -0.224 (0.046) | |
| rs580140 | 21 | 31739378 | G | 0.28 | 1.01 | 2.7E-06 | -0.184 | |
| rs2282335 | 9 | 71055752 | A | 0.36 | 0.98 | 3.6E-06 | 0.171 | |
| rs9375674 | 6 | 130258203 | A | 0.46 | 1.01 | 6.1E-06 | 0.158 | |
| rs1572050 | 13 | 93668766 | A | 0.10 | 0.71 | 6.3E-06 | -0.313 (0.069) | |
| rs17736767 | 5 | 98607864 | G | 0.27 | 0.74 | 6.6E-06 | -0.208 (0.046) | |
| rs12785341 | 11 | 109901068 | C | 0.09 | 0.91 | 8.3E-06 | 0.290 (0.065) | |
| rs6686423 | 1 | 155704134 | A | 0.31 | 0.76 | 8.4E-06 | -0.194 (0.044) | |
| rs7311875 | 12 | 127859220 | G | 0.29 | 1.01 | 1.0E-05 | -0.169 (0.038) | |
| rs907849 | 11 | 72001536 | G | 0.23 | 0.91 | 1.2E-05 | -0.190 (0.043) | |
| rs2511864 | 11 | 82196824 | C | 0.12 | 0.97 | 1.3E-05 | 0.238 (0.055) | |
| rs332479 | 3 | 315440 | C | 0.46 | 1.01 | 1.6E-05 | -0.150 (0.035) | |
| rs3815053 | 17 | 32076589 | C | 0.48 | 1.01 | 1.6E-05 | -0.151 (0.035) | |
| rs4529412 | 7 | 49243390 | T | 0.19 | 0.98 | 2.1E-05 | -0.192 (0.045) | |
| rs1003136 | 5 | 127375714 | A | 0.36 | 0.97 | 2.1E-05 | -0.154 (0.036) | |
| rs6426644 | 1 | 20907695 | C | 0.36 | 1.01 | 2.1E-05 | -0.154 | |
| rs31093 | 16 | 53923677 | G | 0.35 | 1.00 | 2.2E-05 | -0.157 | |
| rs9516371 | 13 | 93688375 | T | 0.33 | 0.98 | 2.2E-05 | -0.158 | |
| rs7325697 | 13 | 98915794 | T | 0.16 | 0.99 | 2.3E-05 | 0.203 | |
| rs1543400 | 20 | 38896007 | C | 0.50 | 0.97 | 2.6E-05 | 0.148 |
β coefficients for the association for sex- and cohort-specific residuals of natural log-transformed renal sinus fat, adjusted for age and BMI.
Nearby genes based on RefSeq genes (build 36). The gene is presented in boldface if the SNP is located within the gene.
* Independent SNPs defined as those with r2 < 0.2 at any locus
** Closest reference gene > 60 Kb away
Figure 2Renal sinus fat quantile-quantile plots for the genome-wide association analysis by sex. (a) Quantile-quantile plot for the genome-wide association analysis of renal sinus fat in women, adjusted for age and BMI. (b) Quantile-quantile plot for the genome-wide association analysis of renal sinus fat in men, adjusted for age and BMI.
Figure 3Renal sinus fat Manhattan plots for the genome-wide association analysis by sex. (a) Manhattan plot of results from the genome-wide association analysis of renal sinus fat in women, adjusted for age and BMI. The dotted line represents a -log p-value threshold of 5 × 10-8. (b) Manhattan plot of results from the genome-wide association analysis of renal sinus fat in men, adjusted for age and BMI. The dotted line represents a -log p-value threshold of 5 × 10-8.
Top 5 independent* SNPs associated with renal sinus fat in women (above) and men (below)
| Women | Results in men for top 5 SNPs observed in women | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| rs2873333 | 2 | 236525509 | C | 0.43 | 0.69 | -0.349 | 2.1E-07 | 0.069 | 0.17 | |
| rs17736767 | 5 | 98607864 | G | 0.27 | 0.74 | -0.340 | 2.3E-06 | -0.080 | 0.14 | |
| rs17111435 | 11 | 109950861 | G | 0.08 | 1.00 | 0.462 | 2.6E-06 | 0.083 | 0.29 | |
| rs9375674 | 6 | 130258203 | A | 0.46 | 1.01 | 0.248 | 4.1E-06 | 0.087 | 0.04 | |
| rs2518144 | 12 | 8650712 | T | 0.45 | 0.98 | 0.253 | 4.1E-06 | 0.046 | 0.26 | |
| Results in women for top 5 SNPs observed in men | ||||||||||
| rs2748531 | 14 | 23791741 | A | 0.13 | 0.89 | -0.299 | 3.6E-06 | -0.126 | 0.14 | |
| rs13414916 | 2 | 159662666 | T | 0.21 | 0.99 | -0.231 | 5.4E-06 | -0.082 | 0.23 | |
| rs11099681 | 4 | 149322904 | C | 0.27 | 1.01 | 0.207 | 5.8E-06 | -0.053 | 0.39 | |
| rs12722875 | 1 | 116617007 | A | 0.33 | 1.01 | -0.190 | 1.3E-05 | -0.005 | 0.93 | |
| rs12432394 | 14 | 21098781 | T | 0.20 | 0.78 | -0.248 | 1.4E-05 | -0.033 | 0.67 | |
The β coefficients and p-values each of the top 5 SNPs in the opposite sex are presented in the far right columns.
β coefficients for the association separately in women and men for cohort-specific residuals of natural log-transformed renal sinus fat, adjusted for age and BMI.
Nearby genes based on RefSeq genes (build 36). The gene is presented in boldface if the SNP is located within the gene.
* Independent SNPs defined as those with r2 < 0.2 at any locus