Literature DB >> 28102248

Tracing the peopling of the world through genomics.

Rasmus Nielsen1,2,3, Joshua M Akey4, Mattias Jakobsson5, Jonathan K Pritchard6,7,8, Sarah Tishkoff9,10, Eske Willerslev3,11,12.   

Abstract

Advances in the sequencing and the analysis of the genomes of both modern and ancient peoples have facilitated a number of breakthroughs in our understanding of human evolutionary history. These include the discovery of interbreeding between anatomically modern humans and extinct hominins; the development of an increasingly detailed description of the complex dispersal of modern humans out of Africa and their population expansion worldwide; and the characterization of many of the genetic adaptions of humans to local environmental conditions. Our interpretation of the evolutionary history and adaptation of humans is being transformed by analyses of these new genomic data.

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Mesh:

Year:  2017        PMID: 28102248      PMCID: PMC5772775          DOI: 10.1038/nature21347

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  133 in total

1.  On the probability of Neanderthal ancestry.

Authors:  M Nordborg
Journal:  Am J Hum Genet       Date:  1998-10       Impact factor: 11.025

2.  The genetic prehistory of the New World Arctic.

Authors:  Maanasa Raghavan; Michael DeGiorgio; Anders Albrechtsen; Ida Moltke; Pontus Skoglund; Thorfinn S Korneliussen; Bjarne Grønnow; Martin Appelt; Hans Christian Gulløv; T Max Friesen; William Fitzhugh; Helena Malmström; Simon Rasmussen; Jesper Olsen; Linea Melchior; Benjamin T Fuller; Simon M Fahrni; Thomas Stafford; Vaughan Grimes; M A Priscilla Renouf; Jerome Cybulski; Niels Lynnerup; Marta Mirazon Lahr; Kate Britton; Rick Knecht; Jette Arneborg; Mait Metspalu; Omar E Cornejo; Anna-Sapfo Malaspinas; Yong Wang; Morten Rasmussen; Vibha Raghavan; Thomas V O Hansen; Elza Khusnutdinova; Tracey Pierre; Kirill Dneprovsky; Claus Andreasen; Hans Lange; M Geoffrey Hayes; Joan Coltrain; Victor A Spitsyn; Anders Götherström; Ludovic Orlando; Toomas Kivisild; Richard Villems; Michael H Crawford; Finn C Nielsen; Jørgen Dissing; Jan Heinemeier; Morten Meldgaard; Carlos Bustamante; Dennis H O'Rourke; Mattias Jakobsson; M Thomas P Gilbert; Rasmus Nielsen; Eske Willerslev
Journal:  Science       Date:  2014-08-29       Impact factor: 47.728

3.  Regional continuity in Australasian Pleistocene hominid evolution.

Authors:  A G Thorne; M H Wolpoff
Journal:  Am J Phys Anthropol       Date:  1981-07       Impact factor: 2.868

4.  Archaic human ancestry in East Asia.

Authors:  Pontus Skoglund; Mattias Jakobsson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-31       Impact factor: 11.205

5.  Inference of human population history from individual whole-genome sequences.

Authors:  Heng Li; Richard Durbin
Journal:  Nature       Date:  2011-07-13       Impact factor: 49.962

6.  The complete genome sequence of a Neanderthal from the Altai Mountains.

Authors:  Kay Prüfer; Fernando Racimo; Nick Patterson; Flora Jay; Sriram Sankararaman; Susanna Sawyer; Anja Heinze; Gabriel Renaud; Peter H Sudmant; Cesare de Filippo; Heng Li; Swapan Mallick; Michael Dannemann; Qiaomei Fu; Martin Kircher; Martin Kuhlwilm; Michael Lachmann; Matthias Meyer; Matthias Ongyerth; Michael Siebauer; Christoph Theunert; Arti Tandon; Priya Moorjani; Joseph Pickrell; James C Mullikin; Samuel H Vohr; Richard E Green; Ines Hellmann; Philip L F Johnson; Hélène Blanche; Howard Cann; Jacob O Kitzman; Jay Shendure; Evan E Eichler; Ed S Lein; Trygve E Bakken; Liubov V Golovanova; Vladimir B Doronichev; Michael V Shunkov; Anatoli P Derevianko; Bence Viola; Montgomery Slatkin; David Reich; Janet Kelso; Svante Pääbo
Journal:  Nature       Date:  2013-12-18       Impact factor: 49.962

7.  Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:  Iosif Lazaridis; Nick Patterson; Alissa Mittnik; Gabriel Renaud; Swapan Mallick; Karola Kirsanow; Peter H Sudmant; Joshua G Schraiber; Sergi Castellano; Mark Lipson; Bonnie Berger; Christos Economou; Ruth Bollongino; Qiaomei Fu; Kirsten I Bos; Susanne Nordenfelt; Heng Li; Cesare de Filippo; Kay Prüfer; Susanna Sawyer; Cosimo Posth; Wolfgang Haak; Fredrik Hallgren; Elin Fornander; Nadin Rohland; Dominique Delsate; Michael Francken; Jean-Michel Guinet; Joachim Wahl; George Ayodo; Hamza A Babiker; Graciela Bailliet; Elena Balanovska; Oleg Balanovsky; Ramiro Barrantes; Gabriel Bedoya; Haim Ben-Ami; Judit Bene; Fouad Berrada; Claudio M Bravi; Francesca Brisighelli; George B J Busby; Francesco Cali; Mikhail Churnosov; David E C Cole; Daniel Corach; Larissa Damba; George van Driem; Stanislav Dryomov; Jean-Michel Dugoujon; Sardana A Fedorova; Irene Gallego Romero; Marina Gubina; Michael Hammer; Brenna M Henn; Tor Hervig; Ugur Hodoglugil; Aashish R Jha; Sena Karachanak-Yankova; Rita Khusainova; Elza Khusnutdinova; Rick Kittles; Toomas Kivisild; William Klitz; Vaidutis Kučinskas; Alena Kushniarevich; Leila Laredj; Sergey Litvinov; Theologos Loukidis; Robert W Mahley; Béla Melegh; Ene Metspalu; Julio Molina; Joanna Mountain; Klemetti Näkkäläjärvi; Desislava Nesheva; Thomas Nyambo; Ludmila Osipova; Jüri Parik; Fedor Platonov; Olga Posukh; Valentino Romano; Francisco Rothhammer; Igor Rudan; Ruslan Ruizbakiev; Hovhannes Sahakyan; Antti Sajantila; Antonio Salas; Elena B Starikovskaya; Ayele Tarekegn; Draga Toncheva; Shahlo Turdikulova; Ingrida Uktveryte; Olga Utevska; René Vasquez; Mercedes Villena; Mikhail Voevoda; Cheryl A Winkler; Levon Yepiskoposyan; Pierre Zalloua; Tatijana Zemunik; Alan Cooper; Cristian Capelli; Mark G Thomas; Andres Ruiz-Linares; Sarah A Tishkoff; Lalji Singh; Kumarasamy Thangaraj; Richard Villems; David Comas; Rem Sukernik; Mait Metspalu; Matthias Meyer; Evan E Eichler; Joachim Burger; Montgomery Slatkin; Svante Pääbo; Janet Kelso; David Reich; Johannes Krause
Journal:  Nature       Date:  2014-09-18       Impact factor: 49.962

8.  Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection.

Authors:  PingHsun Hsieh; Krishna R Veeramah; Joseph Lachance; Sarah A Tishkoff; Jeffrey D Wall; Michael F Hammer; Ryan N Gutenkunst
Journal:  Genome Res       Date:  2016-02-17       Impact factor: 9.043

9.  The genetics of human adaptation: hard sweeps, soft sweeps, and polygenic adaptation.

Authors:  Jonathan K Pritchard; Joseph K Pickrell; Graham Coop
Journal:  Curr Biol       Date:  2010-02-23       Impact factor: 10.834

10.  A population genetic signal of polygenic adaptation.

Authors:  Jeremy J Berg; Graham Coop
Journal:  PLoS Genet       Date:  2014-08-07       Impact factor: 5.917

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  135 in total

Review 1.  One Actor, Many Roles: Histopathologies Associated With APOL1 Genetic Variants.

Authors:  Jeffrey B Kopp; Avi Z Rosenberg
Journal:  Adv Anat Pathol       Date:  2019-05       Impact factor: 3.875

Review 2.  The importance of including ethnically diverse populations in studies of quantitative trait evolution.

Authors:  Michael A McQuillan; Chao Zhang; Sarah A Tishkoff; Alexander Platt
Journal:  Curr Opin Genet Dev       Date:  2020-06-27       Impact factor: 5.578

Review 3.  The Evolutionary History of Human Skin Pigmentation.

Authors:  Jorge Rocha
Journal:  J Mol Evol       Date:  2019-07-30       Impact factor: 2.395

4.  Population genetics, diversity and forensic characteristics of Tai-Kadai-speaking Bouyei revealed by insertion/deletions markers.

Authors:  Guanglin He; Zheng Ren; Jianxin Guo; Fan Zhang; Xing Zou; Hongling Zhang; Qiyan Wang; Jingyan Ji; Meiqing Yang; Ziqian Zhang; Jing Zhang; Yilizhati Nabijiang; Jiang Huang; Chuan-Chao Wang
Journal:  Mol Genet Genomics       Date:  2019-06-13       Impact factor: 3.291

5.  Inference of Population Structure from Time-Series Genotype Data.

Authors:  Tyler A Joseph; Itsik Pe'er
Journal:  Am J Hum Genet       Date:  2019-06-27       Impact factor: 11.025

6.  Diversity and inclusion in genomic research: why the uneven progress?

Authors:  Amy R Bentley; Shawneequa Callier; Charles N Rotimi
Journal:  J Community Genet       Date:  2017-07-18

7.  Identifying early modern human ecological niche expansions and associated cultural dynamics in the South African Middle Stone Age.

Authors:  Francesco d'Errico; William E Banks; Dan L Warren; Giovanni Sgubin; Karen van Niekerk; Christopher Henshilwood; Anne-Laure Daniau; María Fernanda Sánchez Goñi
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

Review 8.  Detecting past male-mediated expansions using the Y chromosome.

Authors:  Chiara Batini; Mark A Jobling
Journal:  Hum Genet       Date:  2017-03-27       Impact factor: 4.132

9.  Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe.

Authors:  Rosa Fregel; Fernando L Méndez; Youssef Bokbot; Dimas Martín-Socas; María D Camalich-Massieu; Jonathan Santana; Jacob Morales; María C Ávila-Arcos; Peter A Underhill; Beth Shapiro; Genevieve Wojcik; Morten Rasmussen; André E R Soares; Joshua Kapp; Alexandra Sockell; Francisco J Rodríguez-Santos; Abdeslam Mikdad; Aioze Trujillo-Mederos; Carlos D Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-12       Impact factor: 11.205

10.  Human variation in the shape of the birth canal is significant and geographically structured.

Authors:  Lia Betti; Andrea Manica
Journal:  Proc Biol Sci       Date:  2018-10-24       Impact factor: 5.349

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