Literature DB >> 28869609

N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis.

Raghu R Edupuganti1, Simon Geiger2, Rik G H Lindeboom1, Hailing Shi3, Phillip J Hsu3, Zhike Lu3, Shuang-Yin Wang1, Marijke P A Baltissen1, Pascal W T C Jansen1, Martin Rossa2, Markus Müller2, Hendrik G Stunnenberg1, Chuan He3, Thomas Carell2, Michiel Vermeulen1.   

Abstract

RNA modifications are integral to the regulation of RNA metabolism. One abundant mRNA modification is N6-methyladenosine (m6A), which affects various aspects of RNA metabolism, including splicing, translation and degradation. Current knowledge about the proteins recruited to m6A to carry out these molecular processes is still limited. Here we describe comprehensive and systematic mass-spectrometry-based screening of m6A interactors in various cell types and sequence contexts. Among the main findings, we identified G3BP1 as a protein that is repelled by m6A and positively regulates mRNA stability in an m6A-regulated manner. Furthermore, we identified FMR1 as a sequence-context-dependent m6A reader, thus revealing a connection between an mRNA modification and an autism spectrum disorder. Collectively, our data represent a rich resource and shed further light on the complex interplay among m6A, m6A interactors and mRNA homeostasis.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28869609      PMCID: PMC5725193          DOI: 10.1038/nsmb.3462

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  70 in total

1.  N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Authors:  Xiao Wang; Boxuan Simen Zhao; Ian A Roundtree; Zhike Lu; Dali Han; Honghui Ma; Xiaocheng Weng; Kai Chen; Hailing Shi; Chuan He
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

2.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Authors:  Pedro J Batista; Benoit Molinie; Jinkai Wang; Kun Qu; Jiajing Zhang; Lingjie Li; Donna M Bouley; Ernesto Lujan; Bahareh Haddad; Kaveh Daneshvar; Ava C Carter; Ryan A Flynn; Chan Zhou; Kok-Seong Lim; Peter Dedon; Marius Wernig; Alan C Mullen; Yi Xing; Cosmas C Giallourakis; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-10-16       Impact factor: 24.633

3.  Near-optimal probabilistic RNA-seq quantification.

Authors:  Nicolas L Bray; Harold Pimentel; Páll Melsted; Lior Pachter
Journal:  Nat Biotechnol       Date:  2016-04-04       Impact factor: 54.908

4.  YTHDF3 facilitates translation and decay of N6-methyladenosine-modified RNA.

Authors:  Hailing Shi; Xiao Wang; Zhike Lu; Boxuan S Zhao; Honghui Ma; Phillip J Hsu; Chang Liu; Chuan He
Journal:  Cell Res       Date:  2017-01-20       Impact factor: 25.617

5.  Human FMRP contains an integral tandem Agenet (Tudor) and KH motif in the amino terminal domain.

Authors:  Leila K Myrick; Hideharu Hashimoto; Xiaodong Cheng; Stephen T Warren
Journal:  Hum Mol Genet       Date:  2014-11-20       Impact factor: 6.150

6.  Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Authors:  Bastian Linder; Anya V Grozhik; Anthony O Olarerin-George; Cem Meydan; Christopher E Mason; Samie R Jaffrey
Journal:  Nat Methods       Date:  2015-06-29       Impact factor: 28.547

7.  FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis.

Authors:  Xu Zhao; Ying Yang; Bao-Fa Sun; Yue Shi; Xin Yang; Wen Xiao; Ya-Juan Hao; Xiao-Li Ping; Yu-Sheng Chen; Wen-Jia Wang; Kang-Xuan Jin; Xing Wang; Chun-Min Huang; Yu Fu; Xiao-Meng Ge; Shu-Hui Song; Hyun Seok Jeong; Hiroyuki Yanagisawa; Yamei Niu; Gui-Fang Jia; Wei Wu; Wei-Min Tong; Akimitsu Okamoto; Chuan He; Jannie M Rendtlew Danielsen; Xiu-Jie Wang; Yun-Gui Yang
Journal:  Cell Res       Date:  2014-11-21       Impact factor: 25.617

8.  G3BP-Caprin1-USP10 complexes mediate stress granule condensation and associate with 40S subunits.

Authors:  Nancy Kedersha; Marc D Panas; Christopher A Achorn; Shawn Lyons; Sarah Tisdale; Tyler Hickman; Marshall Thomas; Judy Lieberman; Gerald M McInerney; Pavel Ivanov; Paul Anderson
Journal:  J Cell Biol       Date:  2016-03-28       Impact factor: 10.539

Review 9.  Recent advances in dynamic m6A RNA modification.

Authors:  Guangchao Cao; Hua-Bing Li; Zhinan Yin; Richard A Flavell
Journal:  Open Biol       Date:  2016-04-13       Impact factor: 6.411

10.  Inosine-containing dsRNA binds a stress-granule-like complex and downregulates gene expression in trans.

Authors:  A D J Scadden
Journal:  Mol Cell       Date:  2007-11-09       Impact factor: 17.970

View more
  166 in total

Review 1.  Where, When, and How: Context-Dependent Functions of RNA Methylation Writers, Readers, and Erasers.

Authors:  Hailing Shi; Jiangbo Wei; Chuan He
Journal:  Mol Cell       Date:  2019-05-16       Impact factor: 17.970

Review 2.  The epitranscriptome and synaptic plasticity.

Authors:  Mathieu N Flamand; Kate D Meyer
Journal:  Curr Opin Neurobiol       Date:  2019-05-17       Impact factor: 6.627

Review 3.  Small changes, big implications: The impact of m6A RNA methylation on gene expression in pluripotency and development.

Authors:  Adam M Heck; Carol J Wilusz
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2019-07-17       Impact factor: 4.490

Review 4.  N6-methyladenosine modifications: interactions with novel RNA-binding proteins and roles in signal transduction.

Authors:  Jiaxin Chen; Xiao Fang; Pengcheng Zhong; Zhangfa Song; Xiaotong Hu
Journal:  RNA Biol       Date:  2019-05-26       Impact factor: 4.652

5.  mTORC1-chaperonin CCT signaling regulates m6A RNA methylation to suppress autophagy.

Authors:  Hong-Wen Tang; Jui-Hsia Weng; Wen Xing Lee; Yanhui Hu; Lei Gu; Sungyun Cho; Gina Lee; Richard Binari; Cathleen Li; Min En Cheng; Ah-Ram Kim; Jun Xu; Zhangfei Shen; Chiwei Xu; John M Asara; John Blenis; Norbert Perrimon
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-09       Impact factor: 11.205

Review 6.  The Epitranscriptome in Translation Regulation.

Authors:  Eyal Peer; Sharon Moshitch-Moshkovitz; Gideon Rechavi; Dan Dominissini
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-08-01       Impact factor: 10.005

Review 7.  Chemical Modifications in the Life of an mRNA Transcript.

Authors:  Sigrid Nachtergaele; Chuan He
Journal:  Annu Rev Genet       Date:  2018-09-19       Impact factor: 16.830

Review 8.  Regulation of Gene Expression by N6-methyladenosine in Cancer.

Authors:  Jun Liu; Bryan T Harada; Chuan He
Journal:  Trends Cell Biol       Date:  2019-03-30       Impact factor: 20.808

Review 9.  Epitranscriptomic regulation by m6A RNA methylation in brain development and diseases.

Authors:  Anil K Chokkalla; Suresh L Mehta; Raghu Vemuganti
Journal:  J Cereb Blood Flow Metab       Date:  2020-09-23       Impact factor: 6.200

10.  N6-Methyladenosine Modification Controls Circular RNA Immunity.

Authors:  Y Grace Chen; Robert Chen; Sadeem Ahmad; Rohit Verma; Sudhir Pai Kasturi; Laura Amaya; James P Broughton; Jeewon Kim; Cristhian Cadena; Bali Pulendran; Sun Hur; Howard Y Chang
Journal:  Mol Cell       Date:  2019-08-29       Impact factor: 17.970

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.