Literature DB >> 26046440

N(6)-methyladenosine Modulates Messenger RNA Translation Efficiency.

Xiao Wang1, Boxuan Simen Zhao1, Ian A Roundtree2, Zhike Lu1, Dali Han1, Honghui Ma1, Xiaocheng Weng1, Kai Chen1, Hailing Shi1, Chuan He3.   

Abstract

N(6)-methyladenosine (m(6)A) is the most abundant internal modification in mammalian mRNA. This modification is reversible and non-stoichiometric and adds another layer to the dynamic control of mRNA metabolism. The stability of m(6)A-modified mRNA is regulated by an m(6)A reader protein, human YTHDF2, which recognizes m(6)A and reduces the stability of target transcripts. Looking at additional functional roles for the modification, we find that another m(6)A reader protein, human YTHDF1, actively promotes protein synthesis by interacting with translation machinery. In a unified mechanism of m(6)A-based regulation in the cytoplasm, YTHDF2-mediated degradation controls the lifetime of target transcripts, whereas YTHDF1-mediated translation promotion increases translation efficiency, ensuring effective protein production from dynamic transcripts that are marked by m(6)A. Therefore, the m(6)A modification in mRNA endows gene expression with fast responses and controllable protein production through these mechanisms.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26046440      PMCID: PMC4825696          DOI: 10.1016/j.cell.2015.05.014

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  60 in total

1.  5'-Terminal and internal methylated nucleotide sequences in HeLa cell mRNA.

Authors:  C M Wei; A Gershowitz; B Moss
Journal:  Biochemistry       Date:  1976-01-27       Impact factor: 3.162

2.  m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells.

Authors:  Pedro J Batista; Benoit Molinie; Jinkai Wang; Kun Qu; Jiajing Zhang; Lingjie Li; Donna M Bouley; Ernesto Lujan; Bahareh Haddad; Kaveh Daneshvar; Ava C Carter; Ryan A Flynn; Chan Zhou; Kok-Seong Lim; Peter Dedon; Marius Wernig; Alan C Mullen; Yi Xing; Cosmas C Giallourakis; Howard Y Chang
Journal:  Cell Stem Cell       Date:  2014-10-16       Impact factor: 24.633

3.  Structure of the YTH domain of human YTHDF2 in complex with an m(6)A mononucleotide reveals an aromatic cage for m(6)A recognition.

Authors:  Fudong Li; Debiao Zhao; Jihui Wu; Yunyu Shi
Journal:  Cell Res       Date:  2014-11-21       Impact factor: 25.617

4.  Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain.

Authors:  Shukun Luo; Liang Tong
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-08       Impact factor: 11.205

5.  Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain.

Authors:  Chao Xu; Xiao Wang; Ke Liu; Ian A Roundtree; Wolfram Tempel; Yanjun Li; Zhike Lu; Chuan He; Jinrong Min
Journal:  Nat Chem Biol       Date:  2014-09-21       Impact factor: 15.040

6.  Transcriptome-wide mapping reveals widespread dynamic-regulated pseudouridylation of ncRNA and mRNA.

Authors:  Schraga Schwartz; Douglas A Bernstein; Maxwell R Mumbach; Marko Jovanovic; Rebecca H Herbst; Brian X León-Ricardo; Jesse M Engreitz; Mitchell Guttman; Rahul Satija; Eric S Lander; Gerald Fink; Aviv Regev
Journal:  Cell       Date:  2014-09-11       Impact factor: 41.582

7.  Solution structure of the YTH domain in complex with N6-methyladenosine RNA: a reader of methylated RNA.

Authors:  Dominik Theler; Cyril Dominguez; Markus Blatter; Julien Boudet; Frédéric H-T Allain
Journal:  Nucleic Acids Res       Date:  2014-11-11       Impact factor: 16.971

8.  Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells.

Authors:  Thomas M Carlile; Maria F Rojas-Duran; Boris Zinshteyn; Hakyung Shin; Kristen M Bartoli; Wendy V Gilbert
Journal:  Nature       Date:  2014-09-05       Impact factor: 49.962

Review 9.  Dynamic RNA modifications in posttranscriptional regulation.

Authors:  Xiao Wang; Chuan He
Journal:  Mol Cell       Date:  2014-10-02       Impact factor: 17.970

Review 10.  Characterizing 5-methylcytosine in the mammalian epitranscriptome.

Authors:  Shobbir Hussain; Jelena Aleksic; Sandra Blanco; Sabine Dietmann; Michaela Frye
Journal:  Genome Biol       Date:  2013-11-29       Impact factor: 13.583

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  1027 in total

Review 1.  RNA epigenetics--chemical messages for posttranscriptional gene regulation.

Authors:  Ian A Roundtree; Chuan He
Journal:  Curr Opin Chem Biol       Date:  2015-11-26       Impact factor: 8.822

Review 2.  The Untranslated Regions of mRNAs in Cancer.

Authors:  Samantha L Schuster; Andrew C Hsieh
Journal:  Trends Cancer       Date:  2019-03-22

Review 3.  Intersections of post-transcriptional gene regulatory mechanisms with intermediary metabolism.

Authors:  Waqar Arif; Gandhar Datar; Auinash Kalsotra
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2017-01-11       Impact factor: 4.490

4.  N(6)-Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis.

Authors:  Lisha Shen; Zhe Liang; Xiaofeng Gu; Ying Chen; Zhi Wei Norman Teo; Xingliang Hou; Weiling Maggie Cai; Peter C Dedon; Lu Liu; Hao Yu
Journal:  Dev Cell       Date:  2016-07-07       Impact factor: 12.270

5.  Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins.

Authors:  Chao Xu; Ke Liu; Hazem Ahmed; Peter Loppnau; Matthieu Schapira; Jinrong Min
Journal:  J Biol Chem       Date:  2015-08-28       Impact factor: 5.157

6.  m6A modulates haematopoietic stem and progenitor cell specification.

Authors:  Chunxia Zhang; Yusheng Chen; Baofa Sun; Lu Wang; Ying Yang; Dongyuan Ma; Junhua Lv; Jian Heng; Yanyan Ding; Yuanyuan Xue; Xinyan Lu; Wen Xiao; Yun-Gui Yang; Feng Liu
Journal:  Nature       Date:  2017-09-06       Impact factor: 49.962

7.  N6-methyladenosine (m6A) recruits and repels proteins to regulate mRNA homeostasis.

Authors:  Raghu R Edupuganti; Simon Geiger; Rik G H Lindeboom; Hailing Shi; Phillip J Hsu; Zhike Lu; Shuang-Yin Wang; Marijke P A Baltissen; Pascal W T C Jansen; Martin Rossa; Markus Müller; Hendrik G Stunnenberg; Chuan He; Thomas Carell; Michiel Vermeulen
Journal:  Nat Struct Mol Biol       Date:  2017-09-04       Impact factor: 15.369

8.  YTHDF1-mediated translation amplifies Wnt-driven intestinal stemness.

Authors:  Bing Han; Sujun Yan; Saisai Wei; Jie Xiang; Kangli Liu; Zhanghui Chen; Rongpan Bai; Jinghao Sheng; Zhengping Xu; Xiangwei Gao
Journal:  EMBO Rep       Date:  2020-02-17       Impact factor: 8.807

9.  Evolving insights into RNA modifications and their functional diversity in the brain.

Authors:  Sarah Nainar; Paul R Marshall; Christina R Tyler; Robert C Spitale; Timothy W Bredy
Journal:  Nat Neurosci       Date:  2016-09-27       Impact factor: 24.884

10.  Zc3h13 Regulates Nuclear RNA m6A Methylation and Mouse Embryonic Stem Cell Self-Renewal.

Authors:  Jing Wen; Ruitu Lv; Honghui Ma; Hongjie Shen; Chenxi He; Jiahua Wang; Fangfang Jiao; Hang Liu; Pengyuan Yang; Li Tan; Fei Lan; Yujiang Geno Shi; Chuan He; Yang Shi; Jianbo Diao
Journal:  Mol Cell       Date:  2018-03-15       Impact factor: 17.970

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