Literature DB >> 30230927

Chemical Modifications in the Life of an mRNA Transcript.

Sigrid Nachtergaele1, Chuan He1.   

Abstract

Investigations over the past eight years of chemical modifications on messenger RNA (mRNA) have revealed a new level of posttranscriptional gene regulation in eukaryotes. Rapid progress in our understanding of these modifications, particularly, N6-methyladenosine (m6A), has revealed their roles throughout the life cycle of an mRNA transcript. m6A methylation provides a rapid mechanism for coordinated transcriptome processing and turnover that is important in embryonic development and cell differentiation. In response to cellular signals, m6A can also regulate the translation of specific pools of transcripts. These mechanisms can be hijacked in human diseases, including numerous cancers and viral infection. Beyond m6A, many other mRNA modifications have been mapped in the transcriptome, but much less is known about their biological functions. As methods continue to be developed, we will be able to study these modifications both more broadly and in greater depth, which will likely reveal a wealth of new RNA biology.

Entities:  

Keywords:  N6-methyladenosine; RNA metabolism; epitranscriptome; ribonucleotide modifications

Mesh:

Substances:

Year:  2018        PMID: 30230927      PMCID: PMC6436393          DOI: 10.1146/annurev-genet-120417-031522

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  139 in total

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Journal:  J Virol       Date:  1976-10       Impact factor: 5.103

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Journal:  Nature       Date:  1975-09-18       Impact factor: 49.962

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Journal:  Cell       Date:  1975-04       Impact factor: 41.582

Review 5.  tRNA's modifications bring order to gene expression.

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Journal:  Curr Opin Microbiol       Date:  2008-04-02       Impact factor: 7.934

6.  Mutation of the methylated tRNA(Lys)(3) residue A58 disrupts reverse transcription and inhibits replication of human immunodeficiency virus type 1.

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Journal:  J Virol       Date:  2001-10       Impact factor: 5.103

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Journal:  Nature       Date:  1975-05-01       Impact factor: 49.962

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Journal:  Nucleic Acids Res       Date:  1975-10       Impact factor: 16.971

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Authors:  K Dimock; C M Stoltzfus
Journal:  Biochemistry       Date:  1977-02-08       Impact factor: 3.162

10.  Trm9-catalyzed tRNA modifications link translation to the DNA damage response.

Authors:  Ulrike Begley; Madhu Dyavaiah; Ashish Patil; John P Rooney; Dan DiRenzo; Christine M Young; Douglas S Conklin; Richard S Zitomer; Thomas J Begley
Journal:  Mol Cell       Date:  2007-12-14       Impact factor: 17.970

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  53 in total

1.  deepEA: a containerized web server for interactive analysis of epitranscriptome sequencing data.

Authors:  Jingjing Zhai; Jie Song; Ting Zhang; Shang Xie; Chuang Ma
Journal:  Plant Physiol       Date:  2021-02-25       Impact factor: 8.340

Review 2.  RNA epigenetics and cardiovascular diseases.

Authors:  Lisa E Dorn; Simon Tual-Chalot; Konstantinos Stellos; Federica Accornero
Journal:  J Mol Cell Cardiol       Date:  2019-03-14       Impact factor: 5.000

3.  Deoxyribozyme-based method for absolute quantification of N 6-methyladenosine fractions at specific sites of RNA.

Authors:  Magda Bujnowska; Jiacheng Zhang; Qing Dai; Emily M Heideman; Jingyi Fei
Journal:  J Biol Chem       Date:  2020-04-08       Impact factor: 5.157

4.  Structural Elucidation of Bisulfite Adducts to Pseudouridine That Result in Deletion Signatures during Reverse Transcription of RNA.

Authors:  Aaron M Fleming; Anton Alenko; Jay P Kitt; Anita M Orendt; Peter F Flynn; Joel M Harris; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2019-10-02       Impact factor: 15.419

5.  Multivalent m6A motifs promote phase separation of YTHDF proteins.

Authors:  Yifei Gao; Gaofeng Pei; Dongxue Li; Ru Li; Yanqiu Shao; Qiangfeng Cliff Zhang; Pilong Li
Journal:  Cell Res       Date:  2019-08-06       Impact factor: 25.617

Review 6.  Emerging role of N4-acetylcytidine modification of RNA in gene regulation and cellular functions.

Authors:  R Karthiya; S Mohammed Wasil; Piyush Khandelia
Journal:  Mol Biol Rep       Date:  2020-11-10       Impact factor: 2.316

Review 7.  The m6A epitranscriptome: transcriptome plasticity in brain development and function.

Authors:  Ido Livneh; Sharon Moshitch-Moshkovitz; Ninette Amariglio; Gideon Rechavi; Dan Dominissini
Journal:  Nat Rev Neurosci       Date:  2019-12-05       Impact factor: 34.870

8.  Antibody-free enzyme-assisted chemical approach for detection of N6-methyladenosine.

Authors:  Ye Wang; Yu Xiao; Shunqing Dong; Qiong Yu; Guifang Jia
Journal:  Nat Chem Biol       Date:  2020-04-27       Impact factor: 15.040

9.  METTL3-mediated m6A methylation negatively modulates autophagy to support porcine blastocyst development‡.

Authors:  Zubing Cao; Ling Zhang; Renyun Hong; Yunsheng Li; Yiqing Wang; Xin Qi; Wei Ning; Di Gao; Tengteng Xu; Yangyang Ma; Tong Yu; Jason G Knott; Anucha Sathanawongs; Yunhai Zhang
Journal:  Biol Reprod       Date:  2021-05-07       Impact factor: 4.285

10.  A critical role of nuclear m6A reader YTHDC1 in leukemogenesis by regulating MCM complex-mediated DNA replication.

Authors:  Yue Sheng; Jiangbo Wei; Fang Yu; Huanzhou Xu; Chunjie Yu; Qiong Wu; Yin Liu; Lei Li; Xiao-Long Cui; Xueying Gu; Bin Shen; Wei Li; Yong Huang; Sumita Bhaduri-McIntosh; Chuan He; Zhijian Qian
Journal:  Blood       Date:  2021-12-30       Impact factor: 22.113

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