Literature DB >> 27572723

Specimen Preparation for High-Resolution Cryo-EM.

L A Passmore1, C J Russo2.   

Abstract

Imaging a material with electrons at near-atomic resolution requires a thin specimen that is stable in the vacuum of the transmission electron microscope. For biological samples, this comprises a thin layer of frozen aqueous solution containing the biomolecular complex of interest. The process of preparing a high-quality specimen is often the limiting step in the determination of structures by single-particle electron cryomicroscopy (cryo-EM). Here, we describe a systematic approach for going from a purified biomolecular complex in aqueous solution to high-resolution electron micrographs that are suitable for 3D structure determination. This includes a series of protocols for the preparation of vitrified specimens on various supports, including all-gold and graphene. We also describe techniques for troubleshooting when a preparation fails to yield suitable specimens, and common mistakes to avoid during each part of the process. Finally, we include recommendations for obtaining the highest quality micrographs from prepared specimens with current microscope, detector, and support technology.
© 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cryo-EM; Electron cryo-microscopy; Electron tomography; Protein structure; Single-particle reconstruction; Substrates

Mesh:

Substances:

Year:  2016        PMID: 27572723      PMCID: PMC5140023          DOI: 10.1016/bs.mie.2016.04.011

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  44 in total

1.  Nicotinic acetylcholine receptor at 4.6 A resolution: transverse tunnels in the channel wall.

Authors:  A Miyazawa; Y Fujiyoshi; M Stowell; N Unwin
Journal:  J Mol Biol       Date:  1999-05-14       Impact factor: 5.469

2.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

3.  An improved holey carbon film for cryo-electron microscopy.

Authors:  Joel Quispe; John Damiano; Stephen E Mick; David P Nackashi; Denis Fellmann; Teddy G Ajero; Bridget Carragher; Clinton S Potter
Journal:  Microsc Microanal       Date:  2007-10       Impact factor: 4.127

4.  Architecture of the RNA polymerase II-Mediator core initiation complex.

Authors:  C Plaschka; L Larivière; L Wenzeck; M Seizl; M Hemann; D Tegunov; E V Petrotchenko; C H Borchers; W Baumeister; F Herzog; E Villa; P Cramer
Journal:  Nature       Date:  2015-02-04       Impact factor: 49.962

5.  Electron microscopy of the stacked disk aggregate of tobacco mosaic virus protein. II. The influence of electron irradiation of the stain distribution.

Authors:  P N Unwin
Journal:  J Mol Biol       Date:  1974-08-25       Impact factor: 5.469

6.  Mechanism of eIF6 release from the nascent 60S ribosomal subunit.

Authors:  Félix Weis; Emmanuel Giudice; Mark Churcher; Li Jin; Christine Hilcenko; Chi C Wong; David Traynor; Robert R Kay; Alan J Warren
Journal:  Nat Struct Mol Biol       Date:  2015-10-19       Impact factor: 15.369

Review 7.  Overview and future of single particle electron cryomicroscopy.

Authors:  Richard Henderson
Journal:  Arch Biochem Biophys       Date:  2015-03-18       Impact factor: 4.013

8.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

Review 9.  Progress towards an optimal specimen support for electron cryomicroscopy.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  Curr Opin Struct Biol       Date:  2016-01-14       Impact factor: 6.809

10.  Ultrastable gold substrates: Properties of a support for high-resolution electron cryomicroscopy of biological specimens.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  J Struct Biol       Date:  2015-11-22       Impact factor: 2.867

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  53 in total

1.  Progress Towards CryoEM: Negative-Stain Procedures for Biological Samples.

Authors:  Shane Gonen
Journal:  Methods Mol Biol       Date:  2021

Review 2.  While the revolution will not be crystallized, biochemistry reigns supreme.

Authors:  Yoshimasa Takizawa; Elad Binshtein; Amanda L Erwin; Tasia M Pyburn; Kathleen F Mittendorf; Melanie D Ohi
Journal:  Protein Sci       Date:  2016-10-06       Impact factor: 6.725

Review 3.  Dawning of a new era in TRP channel structural biology by cryo-electron microscopy.

Authors:  M Gregor Madej; Christine M Ziegler
Journal:  Pflugers Arch       Date:  2018-01-17       Impact factor: 3.657

Review 4.  Membranes under the Magnetic Lens: A Dive into the Diverse World of Membrane Protein Structures Using Cryo-EM.

Authors:  Sarah J Piper; Rachel M Johnson; Denise Wootten; Patrick M Sexton
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

Review 5.  Emerging Themes in CryoEM─Single Particle Analysis Image Processing.

Authors:  Jose Luis Vilas; Jose Maria Carazo; Carlos Oscar S Sorzano
Journal:  Chem Rev       Date:  2022-07-04       Impact factor: 72.087

6.  Determination of Histone Methyltransferase Structures in Complex with the Nucleosome by Cryogenic Electron Microscopy.

Authors:  Cathy J Spangler; Robert K McGinty
Journal:  Methods Mol Biol       Date:  2022

7.  Native Mass Spectrometry-Based Screening for Optimal Sample Preparation in Single-Particle Cryo-EM.

Authors:  Paul Dominic B Olinares; Jin Young Kang; Eliza Llewellyn; Courtney Chiu; James Chen; Brandon Malone; Ruth M Saecker; Elizabeth A Campbell; Seth A Darst; Brian T Chait
Journal:  Structure       Date:  2020-11-19       Impact factor: 5.006

8.  Cryo-EM studies of NAIP-NLRC4 inflammasomes.

Authors:  Nicole Haloupek; Patricia Grob; Jeannette Tenthorey; Russell E Vance; Eva Nogales
Journal:  Methods Enzymol       Date:  2019-05-24       Impact factor: 1.600

9.  Ab Initio Determination of Peptide Structures by MicroED.

Authors:  Chih-Te Zee; Ambarneil Saha; Michael R Sawaya; Jose A Rodriguez
Journal:  Methods Mol Biol       Date:  2021

10.  Structure of the cytoplasmic domain of SctV (SsaV) from the Salmonella SPI-2 injectisome and implications for a pH sensing mechanism.

Authors:  Teige R S Matthews-Palmer; Nayim Gonzalez-Rodriguez; Thomas Calcraft; Signe Lagercrantz; Tobias Zachs; Xiu-Jun Yu; Grzegorz J Grabe; David W Holden; Andrea Nans; Peter B Rosenthal; Sarah L Rouse; Morgan Beeby
Journal:  J Struct Biol       Date:  2021-03-26       Impact factor: 2.867

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