Literature DB >> 35785962

Emerging Themes in CryoEM─Single Particle Analysis Image Processing.

Jose Luis Vilas1, Jose Maria Carazo1, Carlos Oscar S Sorzano1.   

Abstract

Cryo-electron microscopy (CryoEM) has become a vital technique in structural biology. It is an interdisciplinary field that takes advantage of advances in biochemistry, physics, and image processing, among other disciplines. Innovations in these three basic pillars have contributed to the boosting of CryoEM in the past decade. This work reviews the main contributions in image processing to the current reconstruction workflow of single particle analysis (SPA) by CryoEM. Our review emphasizes the time evolution of the algorithms across the different steps of the workflow differentiating between two groups of approaches: analytical methods and deep learning algorithms. We present an analysis of the current state of the art. Finally, we discuss the emerging problems and challenges still to be addressed in the evolution of CryoEM image processing methods in SPA.

Entities:  

Mesh:

Year:  2022        PMID: 35785962      PMCID: PMC9479088          DOI: 10.1021/acs.chemrev.1c00850

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   72.087


  201 in total

1.  A Graph Partitioning Approach to Simultaneous Angular Reconstitution.

Authors:  Gabi Pragier; Ido Greenberg; Xiuyuan Cheng; Yoel Shkolnisky
Journal:  IEEE Trans Comput Imaging       Date:  2016-04-20

2.  Bayesian inference of initial models in cryo-electron microscopy using pseudo-atoms.

Authors:  Paul Joubert; Michael Habeck
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

Review 3.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

4.  Single-particle cryo-EM-Improved ab initio 3D reconstruction with SIMPLE/PRIME.

Authors:  Cyril F Reboul; Michael Eager; Dominika Elmlund; Hans Elmlund
Journal:  Protein Sci       Date:  2017-09-06       Impact factor: 6.725

5.  Method of the Year 2015.

Authors: 
Journal:  Nat Methods       Date:  2016-01       Impact factor: 28.547

6.  Hybrid Electron Microscopy Normal Mode Analysis with Scipion.

Authors:  Mohamad Harastani; Carlos Oscar S Sorzano; Slavica Jonić
Journal:  Protein Sci       Date:  2019-11-20       Impact factor: 6.725

7.  Addressing preferred specimen orientation in single-particle cryo-EM through tilting.

Authors:  Yong Zi Tan; Philip R Baldwin; Joseph H Davis; James R Williamson; Clinton S Potter; Bridget Carragher; Dmitry Lyumkis
Journal:  Nat Methods       Date:  2017-07-03       Impact factor: 28.547

8.  Prevention of overfitting in cryo-EM structure determination.

Authors:  Sjors H W Scheres; Shaoxia Chen
Journal:  Nat Methods       Date:  2012-09       Impact factor: 28.547

9.  Particle alignment reliability in single particle electron cryomicroscopy: a general approach.

Authors:  J Vargas; J Otón; R Marabini; J M Carazo; C O S Sorzano
Journal:  Sci Rep       Date:  2016-02-22       Impact factor: 4.379

10.  Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2.

Authors:  Dari Kimanius; Björn O Forsberg; Sjors Hw Scheres; Erik Lindahl
Journal:  Elife       Date:  2016-11-15       Impact factor: 8.140

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