Literature DB >> 33368001

Progress Towards CryoEM: Negative-Stain Procedures for Biological Samples.

Shane Gonen1.   

Abstract

In recent years, electron cryo-microscopy (CryoEM) has become a powerful method for the high-resolution studies of biological macromolecules. While CryoEM experiments can begin without additional microscopy steps, negative-stain EM can tremendously minimize CryoEM screening. Negative-stain is a quick method that can be used to screen for robust biochemical conditions, the integrity, binding, and composition of samples and to get an estimation of sample grid concentration. For some applications, the map resolutions potentially afforded by stain may be as biologically informative as in CryoEM. Here, I describe the benefits and pitfalls of negative-stain EM, with particular emphasis on Uranyl stains with the main goal of screening in advance of CryoEM. In addition, I provide a materials list, detailed protocol and possible adjustments for the use of stains for biological samples requiring imaging and/or diffraction-based methods of EM.

Keywords:  Averaging; CryoEM; Crystals; Electron crystallography; Electron microscopy; Negative-stain; Single-particle; Uranyl acetate; Uranyl formate

Mesh:

Substances:

Year:  2021        PMID: 33368001     DOI: 10.1007/978-1-0716-0966-8_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  14 in total

Review 1.  Reaching the information limit in cryo-EM of biological macromolecules: experimental aspects.

Authors:  Robert M Glaeser; Richard J Hall
Journal:  Biophys J       Date:  2011-05-18       Impact factor: 4.033

Review 2.  Single-particle cryo-EM-How did it get here and where will it go.

Authors:  Yifan Cheng
Journal:  Science       Date:  2018-08-31       Impact factor: 47.728

Review 3.  Processing of Structurally Heterogeneous Cryo-EM Data in RELION.

Authors:  S H W Scheres
Journal:  Methods Enzymol       Date:  2016-05-31       Impact factor: 1.600

Review 4.  Software tools for automated transmission electron microscopy.

Authors:  Martin Schorb; Isabella Haberbosch; Wim J H Hagen; Yannick Schwab; David N Mastronarde
Journal:  Nat Methods       Date:  2019-05-13       Impact factor: 47.990

5.  Benchmarking cryo-EM Single Particle Analysis Workflow.

Authors:  Laura Y Kim; William J Rice; Edward T Eng; Mykhailo Kopylov; Anchi Cheng; Ashleigh M Raczkowski; Kelsey D Jordan; Daija Bobe; Clinton S Potter; Bridget Carragher
Journal:  Front Mol Biosci       Date:  2018-06-04

Review 6.  A primer to single-particle cryo-electron microscopy.

Authors:  Yifan Cheng; Nikolaus Grigorieff; Pawel A Penczek; Thomas Walz
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

Review 7.  Specimen Preparation for High-Resolution Cryo-EM.

Authors:  L A Passmore; C J Russo
Journal:  Methods Enzymol       Date:  2016-06-16       Impact factor: 1.600

8.  The structure of purified kinetochores reveals multiple microtubule-attachment sites.

Authors:  Shane Gonen; Bungo Akiyoshi; Matthew G Iadanza; Dan Shi; Nicole Duggan; Sue Biggins; Tamir Gonen
Journal:  Nat Struct Mol Biol       Date:  2012-08-12       Impact factor: 15.369

9.  Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

Authors:  Xueming Li; Paul Mooney; Shawn Zheng; Christopher R Booth; Michael B Braunfeld; Sander Gubbens; David A Agard; Yifan Cheng
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

10.  Negative Staining and Image Classification - Powerful Tools in Modern Electron Microscopy.

Authors:  Melanie Ohi; Ying Li; Yifan Cheng; Thomas Walz
Journal:  Biol Proced Online       Date:  2004-03-19       Impact factor: 3.244

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