Literature DB >> 35849490

Membranes under the Magnetic Lens: A Dive into the Diverse World of Membrane Protein Structures Using Cryo-EM.

Sarah J Piper1,2, Rachel M Johnson1,2, Denise Wootten1,2, Patrick M Sexton1,2.   

Abstract

Membrane proteins are highly diverse in both structure and function and can, therefore, present different challenges for structure determination. They are biologically important for cells and organisms as gatekeepers for information and molecule transfer across membranes, but each class of membrane proteins can present unique obstacles to structure determination. Historically, many membrane protein structures have been investigated using highly engineered constructs or using larger fusion proteins to improve solubility and/or increase particle size. Other strategies included the deconstruction of the full-length protein to target smaller soluble domains. These manipulations were often required for crystal formation to support X-ray crystallography or to circumvent lower resolution due to high noise and dynamic motions of protein subdomains. However, recent revolutions in membrane protein biochemistry and cryo-electron microscopy now provide an opportunity to solve high resolution structures of both large, >1 megadalton (MDa), and small, <100 kDa (kDa), drug targets in near-native conditions, routinely reaching resolutions around or below 3 Å. This review provides insights into how the recent advances in membrane biology and biochemistry, as well as technical advances in cryo-electron microscopy, help us to solve structures of a large variety of membrane protein groups, from small receptors to large transporters and more complex machineries.

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Year:  2022        PMID: 35849490      PMCID: PMC9480104          DOI: 10.1021/acs.chemrev.1c00837

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   72.087


  281 in total

Review 1.  Unstructural Biology of TRP Ion Channels: The Role of Intrinsically Disordered Regions in Channel Function and Regulation.

Authors:  Benedikt Goretzki; Charlotte Guhl; Frederike Tebbe; Jean-Martin Harder; Ute A Hellmich
Journal:  J Mol Biol       Date:  2021-03-16       Impact factor: 5.469

2.  Structure of the human multidrug transporter ABCG2.

Authors:  Nicholas M I Taylor; Ioannis Manolaridis; Scott M Jackson; Julia Kowal; Henning Stahlberg; Kaspar P Locher
Journal:  Nature       Date:  2017-05-29       Impact factor: 49.962

3.  The antidepressant drug vilazodone is an allosteric inhibitor of the serotonin transporter.

Authors:  Per Plenge; Dongxue Yang; Kristine Salomon; Louise Laursen; Iris E Kalenderoglou; Amy H Newman; Eric Gouaux; Jonathan A Coleman; Claus J Loland
Journal:  Nat Commun       Date:  2021-08-20       Impact factor: 14.919

Review 4.  Approaches to altering particle distributions in cryo-electron microscopy sample preparation.

Authors:  Ieva Drulyte; Rachel M Johnson; Emma L Hesketh; Daniel L Hurdiss; Charlotte A Scarff; Sebastian A Porav; Neil A Ranson; Stephen P Muench; Rebecca F Thompson
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-05-18       Impact factor: 7.652

5.  Microfluidic protein isolation and sample preparation for high-resolution cryo-EM.

Authors:  Claudio Schmidli; Stefan Albiez; Luca Rima; Ricardo Righetto; Inayatulla Mohammed; Paolo Oliva; Lubomir Kovacik; Henning Stahlberg; Thomas Braun
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-10       Impact factor: 11.205

6.  Ligand-induced conformational changes in a SMALP-encapsulated GPCR.

Authors:  Sarah J Routledge; Mohammed Jamshad; Haydn A Little; Yu-Pin Lin; John Simms; Alpesh Thakker; Corinne M Spickett; Roslyn M Bill; Tim R Dafforn; David R Poyner; Mark Wheatley
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-02-29       Impact factor: 3.747

7.  Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs.

Authors:  Tristan Bepler; Andrew Morin; Micah Rapp; Julia Brasch; Lawrence Shapiro; Alex J Noble; Bonnie Berger
Journal:  Nat Methods       Date:  2019-10-07       Impact factor: 28.547

8.  A cryo-electron tomography workflow reveals protrusion-mediated shedding on injured plasma membrane.

Authors:  Shrawan Kumar Mageswaran; Wei Yuan Yang; Yogaditya Chakrabarty; Catherine M Oikonomou; Grant J Jensen
Journal:  Sci Adv       Date:  2021-03-26       Impact factor: 14.136

9.  Structure of the full-length TRPV2 channel by cryo-EM.

Authors:  Kevin W Huynh; Matthew R Cohen; Jiansen Jiang; Amrita Samanta; David T Lodowski; Z Hong Zhou; Vera Y Moiseenkova-Bell
Journal:  Nat Commun       Date:  2016-03-29       Impact factor: 14.919

10.  Cryo-EM structure of respiratory complex I at work.

Authors:  Kristian Parey; Ulrich Brandt; Hao Xie; Deryck J Mills; Karin Siegmund; Janet Vonck; Werner Kühlbrandt; Volker Zickermann
Journal:  Elife       Date:  2018-10-02       Impact factor: 8.140

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