Literature DB >> 26479198

Mechanism of eIF6 release from the nascent 60S ribosomal subunit.

Félix Weis1,2,3,4, Emmanuel Giudice5, Mark Churcher2,3,4, Li Jin2,3,4,6, Christine Hilcenko1,2,3,4, Chi C Wong7, David Traynor6, Robert R Kay6, Alan J Warren1,2,3,4.   

Abstract

SBDS protein (deficient in the inherited leukemia-predisposition disorder Shwachman-Diamond syndrome) and the GTPase EFL1 (an EF-G homolog) activate nascent 60S ribosomal subunits for translation by catalyzing eviction of the antiassociation factor eIF6 from nascent 60S ribosomal subunits. However, the mechanism is completely unknown. Here, we present cryo-EM structures of human SBDS and SBDS-EFL1 bound to Dictyostelium discoideum 60S ribosomal subunits with and without endogenous eIF6. SBDS assesses the integrity of the peptidyl (P) site, bridging uL16 (mutated in T-cell acute lymphoblastic leukemia) with uL11 at the P-stalk base and the sarcin-ricin loop. Upon EFL1 binding, SBDS is repositioned around helix 69, thus facilitating a conformational switch in EFL1 that displaces eIF6 by competing for an overlapping binding site on the 60S ribosomal subunit. Our data reveal the conserved mechanism of eIF6 release, which is corrupted in both inherited and sporadic leukemias.

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Year:  2015        PMID: 26479198      PMCID: PMC4871238          DOI: 10.1038/nsmb.3112

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  68 in total

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Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

3.  A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.

Authors:  Bethany S Strunk; Megan N Novak; Crystal L Young; Katrin Karbstein
Journal:  Cell       Date:  2012-07-06       Impact factor: 41.582

4.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

5.  Analysis of risk factors for myelodysplasias, leukemias and death from infection among patients with congenital neutropenia. Experience of the French Severe Chronic Neutropenia Study Group.

Authors:  Jean Donadieu; Thierry Leblanc; Brigitte Bader Meunier; Mohamed Barkaoui; Odile Fenneteau; Yves Bertrand; Micheline Maier-Redelsperger; Marguerite Micheau; Jean Louis Stephan; Noel Phillipe; Pierre Bordigoni; Annie Babin-Boilletot; Philippe Bensaid; Anne Marie Manel; Etienne Vilmer; Isabelle Thuret; Stephane Blanche; Eliane Gluckman; Alain Fischer; Françoise Mechinaud; Bertrand Joly; Thierry Lamy; Olivier Hermine; Bruno Cassinat; Christine Bellanné-Chantelot; Christine Chomienne
Journal:  Haematologica       Date:  2005-01       Impact factor: 9.941

6.  Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits.

Authors:  Ning Gao; Andrey V Zavialov; Måns Ehrenberg; Joachim Frank
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

9.  The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.

Authors:  T Martin Schmeing; Rebecca M Voorhees; Ann C Kelley; Yong-Gui Gao; Frank V Murphy; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2009-10-15       Impact factor: 47.728

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  82 in total

1.  Ribosomal 60S-subunit production: the final scene.

Authors:  Célia Plisson-Chastang; Natacha Larburu; Pierre-Emmanuel Gleizes
Journal:  Nat Struct Mol Biol       Date:  2015-11       Impact factor: 15.369

2.  Decoding erythropoiesis.

Authors:  Alan J Warren
Journal:  Blood       Date:  2017-02-02       Impact factor: 22.113

3.  Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis.

Authors:  Andrey G Malyutin; Sharmishtha Musalgaonkar; Stephanie Patchett; Joachim Frank; Arlen W Johnson
Journal:  EMBO J       Date:  2017-02-08       Impact factor: 11.598

Review 4.  An emerging role for the ribosome as a nexus for post-translational modifications.

Authors:  Deniz Simsek; Maria Barna
Journal:  Curr Opin Cell Biol       Date:  2017-04-23       Impact factor: 8.382

Review 5.  Principles of 60S ribosomal subunit assembly emerging from recent studies in yeast.

Authors:  Salini Konikkat; John L Woolford
Journal:  Biochem J       Date:  2017-01-15       Impact factor: 3.857

6.  uL11, a central player in translation.

Authors:  Anders Liljas
Journal:  Cell Cycle       Date:  2016-04-21       Impact factor: 4.534

Review 7.  Ribosomopathies: Old Concepts, New Controversies.

Authors:  Katherine I Farley-Barnes; Lisa M Ogawa; Susan J Baserga
Journal:  Trends Genet       Date:  2019-07-31       Impact factor: 11.639

8.  Ribosomal Lesions Promote Oncogenic Mutagenesis.

Authors:  Sergey O Sulima; Kim R Kampen; Stijn Vereecke; Daniele Pepe; Laura Fancello; Jelle Verbeeck; Jonathan D Dinman; Kim De Keersmaecker
Journal:  Cancer Res       Date:  2018-11-27       Impact factor: 12.701

Review 9.  Probing the mechanisms underlying human diseases in making ribosomes.

Authors:  Katherine I Farley; Susan J Baserga
Journal:  Biochem Soc Trans       Date:  2016-08-15       Impact factor: 5.407

10.  DNAJC21 Mutations Link a Cancer-Prone Bone Marrow Failure Syndrome to Corruption in 60S Ribosome Subunit Maturation.

Authors:  Hemanth Tummala; Amanda J Walne; Mike Williams; Nicholas Bockett; Laura Collopy; Shirleny Cardoso; Alicia Ellison; Rob Wynn; Thierry Leblanc; Jude Fitzgibbon; David P Kelsell; David A van Heel; Elspeth Payne; Vincent Plagnol; Inderjeet Dokal; Tom Vulliamy
Journal:  Am J Hum Genet       Date:  2016-06-23       Impact factor: 11.025

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