Literature DB >> 33368013

Ab Initio Determination of Peptide Structures by MicroED.

Chih-Te Zee1, Ambarneil Saha1, Michael R Sawaya2, Jose A Rodriguez3.   

Abstract

Structural elucidation of small macromolecules such as peptides has recently been facilitated by a growing number of technological advances to existing crystallographic methods. The emergence of electron micro-diffraction (MicroED) of protein nanocrystals under cryogenic conditions has enabled the interrogation of crystalline peptide assemblies only hundreds of nanometers thick. Collection of atomic or near-atomic resolution data by these methods has permitted the ab initio determination of structures of various amyloid-forming peptides, including segments derived from prions and ice-nucleating proteins. This chapter focuses on the process of ab initio structural determination from nano-scale peptide assemblies and other similar molecules.

Entities:  

Keywords:  Ab initio; Amyloid; Direct methods; Nanocrystal; Peptide

Mesh:

Substances:

Year:  2021        PMID: 33368013      PMCID: PMC8726681          DOI: 10.1007/978-1-0716-0966-8_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  34 in total

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Journal:  Annu Rev Biophys       Date:  2012-03-14       Impact factor: 12.981

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Journal:  Science       Date:  2017-01-13       Impact factor: 47.728

3.  Design guidelines for an electron diffractometer for structural chemistry and structural biology.

Authors:  Jonas Heidler; Radosav Pantelic; Julian T C Wennmacher; Christian Zaubitzer; Ariane Fecteau-Lefebvre; Kenneth N Goldie; Elisabeth Müller; Julian J Holstein; Eric van Genderen; Sacha De Carlo; Tim Gruene
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-04-08       Impact factor: 7.652

4.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

5.  A Medipix quantum area detector allows rotation electron diffraction data collection from submicrometre three-dimensional protein crystals.

Authors:  Igor Nederlof; Eric van Genderen; Yao Wang Li; Jan Pieter Abrahams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-15

6.  Overview of the CCP4 suite and current developments.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

7.  The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination.

Authors:  Christopher G Jones; Michael W Martynowycz; Johan Hattne; Tyler J Fulton; Brian M Stoltz; Jose A Rodriguez; Hosea M Nelson; Tamir Gonen
Journal:  ACS Cent Sci       Date:  2018-11-02       Impact factor: 14.553

8.  Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction.

Authors:  Marcus Gallagher-Jones; Colin Ophus; Karen C Bustillo; David R Boyer; Ouliana Panova; Calina Glynn; Chih-Te Zee; Jim Ciston; Kevin Canton Mancia; Andrew M Minor; Jose A Rodriguez
Journal:  Commun Biol       Date:  2019-01-18

9.  Homochiral and racemic MicroED structures of a peptide repeat from the ice-nucleation protein InaZ.

Authors:  Chih-Te Zee; Calina Glynn; Marcus Gallagher-Jones; Jennifer Miao; Carlos G Santiago; Duilio Cascio; Tamir Gonen; Michael R Sawaya; Jose A Rodriguez
Journal:  IUCrJ       Date:  2019-01-24       Impact factor: 4.769

10.  Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp.

Authors:  Marcus Gallagher-Jones; Calina Glynn; David R Boyer; Michael W Martynowycz; Evelyn Hernandez; Jennifer Miao; Chih-Te Zee; Irina V Novikova; Lukasz Goldschmidt; Heather T McFarlane; Gustavo F Helguera; James E Evans; Michael R Sawaya; Duilio Cascio; David S Eisenberg; Tamir Gonen; Jose A Rodriguez
Journal:  Nat Struct Mol Biol       Date:  2018-01-15       Impact factor: 15.369

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  1 in total

Review 1.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

  1 in total

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