Literature DB >> 26908360

Increased yield of actionable mutations using multi-gene panels to assess hereditary cancer susceptibility in an ethnically diverse clinical cohort.

Charité Ricker1, Julie O Culver2, Katrina Lowstuter2, Duveen Sturgeon2, Julia D Sturgeon2, Christopher R Chanock2, William J Gauderman3, Kevin J McDonnell4, Gregory E Idos4, Stephen B Gruber5.   

Abstract

This study aims to assess multi-gene panel testing in an ethnically diverse clinical cancer genetics practice. We conducted a retrospective study of individuals with a personal or family history of cancer undergoing clinically indicated multi-gene panel tests of 6-110 genes, from six commercial laboratories. The 475 patients in the study included 228 Hispanics (47.6%), 166 non-Hispanic Whites (35.4%), 55 Asians (11.6%), 19 Blacks (4.0%), and seven others (1.5%). Panel testing found that 15.6% (74/475) of patients carried deleterious mutations for a total of 79 mutations identified. This included 7.4% (35/475) of patients who had a mutation identified that would not have been tested with a gene-by-gene approach. The identification of a panel-added mutation impacted clinical management for most of cases (69%, 24/35), and genetic testing was recommended for the first degree relatives of nearly all of them (91%, 32/35). Variants of uncertain significance (VUSs) were identified in a higher proportion of tests performed in ethnic minorities. Multi-gene panel testing increases the yield of mutations detected and adds to the capability of providing individualized cancer risk assessment. VUSs represent an interpretive challenge due to less data available outside of White, non-Hispanic populations. Further studies are necessary to expand understanding of the implementation and utilization of panels across broad clinical settings and patient populations.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Hereditary cancer; cancer risk assessment; ethnic minorities; multi-gene panels; variants of uncertain significance

Mesh:

Year:  2016        PMID: 26908360      PMCID: PMC4835267          DOI: 10.1016/j.cancergen.2015.12.013

Source DB:  PubMed          Journal:  Cancer Genet


  17 in total

1.  Clinical Actionability of Multigene Panel Testing for Hereditary Breast and Ovarian Cancer Risk Assessment.

Authors:  Andrea Desmond; Allison W Kurian; Michele Gabree; Meredith A Mills; Michael J Anderson; Yuya Kobayashi; Nora Horick; Shan Yang; Kristen M Shannon; Nadine Tung; James M Ford; Stephen E Lincoln; Leif W Ellisen
Journal:  JAMA Oncol       Date:  2015-10       Impact factor: 31.777

2.  A comprehensive laboratory-based program for classification of variants of uncertain significance in hereditary cancer genes.

Authors:  J M Eggington; K R Bowles; K Moyes; S Manley; L Esterling; S Sizemore; E Rosenthal; A Theisen; J Saam; C Arnell; D Pruss; J Bennett; L A Burbidge; B Roa; R J Wenstrup
Journal:  Clin Genet       Date:  2013-12-20       Impact factor: 4.438

Review 3.  African genetic diversity: implications for human demographic history, modern human origins, and complex disease mapping.

Authors:  Michael C Campbell; Sarah A Tishkoff
Journal:  Annu Rev Genomics Hum Genet       Date:  2008       Impact factor: 8.929

4.  Frequency of mutations in individuals with breast cancer referred for BRCA1 and BRCA2 testing using next-generation sequencing with a 25-gene panel.

Authors:  Nadine Tung; Chiara Battelli; Brian Allen; Rajesh Kaldate; Satish Bhatnagar; Karla Bowles; Kirsten Timms; Judy E Garber; Christina Herold; Leif Ellisen; Jill Krejdovsky; Kim DeLeonardis; Kristin Sedgwick; Kathleen Soltis; Benjamin Roa; Richard J Wenstrup; Anne-Renee Hartman
Journal:  Cancer       Date:  2014-09-03       Impact factor: 6.860

5.  Cancer genetic testing panels for inherited cancer susceptibility: the clinical experience of a large adult genetics practice.

Authors:  Christina G Selkirk; Kristen J Vogel; Anna C Newlin; Scott M Weissman; Shelly M Weiss; Chi-Hsiung Wang; Peter J Hulick
Journal:  Fam Cancer       Date:  2014-12       Impact factor: 2.375

6.  Inherited mutations in 17 breast cancer susceptibility genes among a large triple-negative breast cancer cohort unselected for family history of breast cancer.

Authors:  Fergus J Couch; Steven N Hart; Priyanka Sharma; Amanda Ewart Toland; Xianshu Wang; Penelope Miron; Janet E Olson; Andrew K Godwin; V Shane Pankratz; Curtis Olswold; Seth Slettedahl; Emily Hallberg; Lucia Guidugli; Jaime I Davila; Matthias W Beckmann; Wolfgang Janni; Brigitte Rack; Arif B Ekici; Dennis J Slamon; Irene Konstantopoulou; Florentia Fostira; Athanassios Vratimos; George Fountzilas; Liisa M Pelttari; William J Tapper; Lorraine Durcan; Simon S Cross; Robert Pilarski; Charles L Shapiro; Jennifer Klemp; Song Yao; Judy Garber; Angela Cox; Hiltrud Brauch; Christine Ambrosone; Heli Nevanlinna; Drakoulis Yannoukakos; Susan L Slager; Celine M Vachon; Diana M Eccles; Peter A Fasching
Journal:  J Clin Oncol       Date:  2014-12-01       Impact factor: 44.544

7.  The integration of next-generation sequencing panels in the clinical cancer genetics practice: an institutional experience.

Authors:  Caitlin B Mauer; Sara M Pirzadeh-Miller; Linda D Robinson; David M Euhus
Journal:  Genet Med       Date:  2013-10-10       Impact factor: 8.822

8.  Utilization of multigene panels in hereditary cancer predisposition testing: analysis of more than 2,000 patients.

Authors:  Holly LaDuca; A J Stuenkel; Jill S Dolinsky; Steven Keiles; Stephany Tandy; Tina Pesaran; Elaine Chen; Chia-Ling Gau; Erika Palmaer; Kamelia Shoaepour; Divya Shah; Virginia Speare; Stephanie Gandomi; Elizabeth Chao
Journal:  Genet Med       Date:  2014-04-24       Impact factor: 8.822

9.  Panel-based testing for inherited colorectal cancer: a descriptive study of clinical testing performed by a US laboratory.

Authors:  D Cragun; C Radford; J S Dolinsky; M Caldwell; E Chao; T Pal
Journal:  Clin Genet       Date:  2014-03-20       Impact factor: 4.438

10.  Breast-cancer risk in families with mutations in PALB2.

Authors:  Antonis C Antoniou; Silvia Casadei; Tuomas Heikkinen; Daniel Barrowdale; Katri Pylkäs; Jonathan Roberts; Andrew Lee; Deepak Subramanian; Kim De Leeneer; Florentia Fostira; Eva Tomiak; Susan L Neuhausen; Zhi L Teo; Sofia Khan; Kristiina Aittomäki; Jukka S Moilanen; Clare Turnbull; Sheila Seal; Arto Mannermaa; Anne Kallioniemi; Geoffrey J Lindeman; Saundra S Buys; Irene L Andrulis; Paolo Radice; Carlo Tondini; Siranoush Manoukian; Amanda E Toland; Penelope Miron; Jeffrey N Weitzel; Susan M Domchek; Bruce Poppe; Kathleen B M Claes; Drakoulis Yannoukakos; Patrick Concannon; Jonine L Bernstein; Paul A James; Douglas F Easton; David E Goldgar; John L Hopper; Nazneen Rahman; Paolo Peterlongo; Heli Nevanlinna; Mary-Claire King; Fergus J Couch; Melissa C Southey; Robert Winqvist; William D Foulkes; Marc Tischkowitz
Journal:  N Engl J Med       Date:  2014-08-07       Impact factor: 91.245

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  30 in total

Review 1.  Genetic testing for hereditary gastrointestinal cancer syndromes: Interpreting results in today's practice.

Authors:  Jacquelyn M Powers; Jessica E Ebrahimzadeh; Bryson W Katona
Journal:  Curr Treat Options Gastroenterol       Date:  2019-12

2.  Inequities in multi-gene hereditary cancer testing: lower diagnostic yield and higher VUS rate in individuals who identify as Hispanic, African or Asian and Pacific Islander as compared to European.

Authors:  Mesaki K Ndugga-Kabuye; Rachel B Issaka
Journal:  Fam Cancer       Date:  2019-10       Impact factor: 2.375

3.  Prospective Study of Cancer Genetic Variants: Variation in Rate of Reclassification by Ancestry.

Authors:  Thomas P Slavin; Lily R Van Tongeren; Carolyn E Behrendt; Ilana Solomon; Christina Rybak; Bita Nehoray; Lili Kuzmich; Mariana Niell-Swiller; Kathleen R Blazer; Shu Tao; Kai Yang; Julie O Culver; Sharon Sand; Danielle Castillo; Josef Herzog; Stacy W Gray; Jeffrey N Weitzel
Journal:  J Natl Cancer Inst       Date:  2018-10-01       Impact factor: 13.506

4.  Genomic Disparities in Breast Cancer Among Latinas.

Authors:  Filipa Lynce; Kristi D Graves; Lina Jandorf; Charite Ricker; Eida Castro; Laura Moreno; Bianca Augusto; Laura Fejerman; Susan T Vadaparampil
Journal:  Cancer Control       Date:  2016-10       Impact factor: 3.302

5.  Insurance coverage does not predict outcomes of genetic testing: The search for meaning in payer decisions for germline cancer tests.

Authors:  Laura M Amendola; M Ragan Hart; Robin L Bennett; Martha Horike-Pyne; Michael Dorschner; Brian Shirts; Gail P Jarvik
Journal:  J Genet Couns       Date:  2019-07-17       Impact factor: 2.537

6.  Prevalence of mutations in a diverse cohort of 3162 women tested via the same multigene cancer panel in a managed care health plan.

Authors:  Mónica Alvarado; George E Tiller; Joanie Chung; Reina Haque
Journal:  J Community Genet       Date:  2020-02-24

7.  A comparison of cancer risk assessment and testing outcomes in patients from underserved vs. tertiary care settings.

Authors:  Huma Q Rana; Sarah R Cochrane; Elaine Hiller; Ruth N Akindele; Callie M Nibecker; Ludmila A Svoboda; Angel M Cronin; Judy E Garber; Christopher S Lathan
Journal:  J Community Genet       Date:  2017-11-18

8.  Patient communication of cancer genetic test results in a diverse population.

Authors:  Charité N Ricker; Rachel B Koff; Chenxu Qu; Julie Culver; Duveen Sturgeon; Kerry E Kingham; Katrina Lowstuter; Nicolette M Chun; Courtney Rowe-Teeter; Alexandra Lebensohn; Peter Levonian; Katlyn Partynski; Karlena Lara-Otero; Christine Hong; Iva M Petrovchich; Meredith A Mills; Anne-Renee Hartman; Brian Allen; Uri Ladabaum; Kevin McDonnell; James M Ford; Stephen B Gruber; Allison W Kurian; Gregory E Idos
Journal:  Transl Behav Med       Date:  2018-01-29       Impact factor: 3.046

9.  Preferences for multigene panel testing for hereditary breast cancer risk among ethnically diverse BRCA-uninformative families.

Authors:  Belinda Vicuña; Harold D Delaney; Kristina G Flores; Lori Ballinger; Melanie Royce; Zoneddy Dayao; Tuya Pal; Anita Y Kinney
Journal:  J Community Genet       Date:  2017-10-02

10.  Genetic Gastric Cancer Susceptibility in the International Clinical Cancer Genomics Community Research Network.

Authors:  Thomas Slavin; Susan L Neuhausen; Christina Rybak; Ilana Solomon; Bita Nehoray; Kathleen Blazer; Mariana Niell-Swiller; Aaron W Adamson; Yate-Ching Yuan; Kai Yang; Sharon Sand; Danielle Castillo; Josef Herzog; Xiwei Wu; Shu Tao; Tanya Chavez; Yanghee Woo; Joseph Chao; Pamela Mora; Darling Horcasitas; Jeffrey Weitzel
Journal:  Cancer Genet       Date:  2017-08-17
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