Literature DB >> 26800993

Nitrogen-detected TROSY yields comparable sensitivity to proton-detected TROSY for non-deuterated, large proteins under physiological salt conditions.

Koh Takeuchi1,2, Haribabu Arthanari3, Misaki Imai4, Gerhard Wagner5, Ichio Shimada6,7.   

Abstract

Direct detection of the TROSY component of proton-attached (15)N nuclei ((15)N-detected TROSY) yields high quality spectra with high field magnets, by taking advantage of the slow (15)N transverse relaxation. The slow transverse relaxation and narrow line width of the (15)N-detected TROSY resonances are expected to compensate for the inherently low (15)N sensitivity. However, the sensitivity of (15)N-detected TROSY in a previous report was one-order of magnitude lower than in the conventional (1)H-detected version. This could be due to the fact that the previous experiments were performed at low salt (0-50 mM), which is advantageous for (1)H-detected experiments. Here, we show that the sensitivity gap between (15)N and (1)H becomes marginal for a non-deuterated, large protein (τ c = 35 ns) at a physiological salt concentration (200 mM). This effect is due to the high salt tolerance of the (15)N-detected TROSY. Together with the previously reported benefits of the (15)N-detected TROSY, our results provide further support for the significance of this experiment for structural studies of macromolecules when using high field magnets near and above 1 GHz.

Entities:  

Keywords:  High field magnet; Nitrogen detection; Protein NMR; Salt concentration; Sensitivity; TROSY

Mesh:

Substances:

Year:  2016        PMID: 26800993      PMCID: PMC4871712          DOI: 10.1007/s10858-016-0015-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  22 in total

Review 1.  Impact of transverse relaxation optimized spectroscopy (TROSY) on NMR as a technique in structural biology.

Authors:  K Pervushin
Journal:  Q Rev Biophys       Date:  2000-05       Impact factor: 5.318

2.  A simple method for improving protein solubility and long-term stability.

Authors:  Alexander P Golovanov; Guillaume M Hautbergue; Stuart A Wilson; Lu-Yun Lian
Journal:  J Am Chem Soc       Date:  2004-07-28       Impact factor: 15.419

3.  Optimization of 13C direct detection NMR methods.

Authors:  Nobuhisa Shimba; Helena Kovacs; Alan S Stern; Anson M Nomura; Ichio Shimada; Jeffrey C Hoch; Charles S Craik; Volker Dötsch
Journal:  J Biomol NMR       Date:  2004-10       Impact factor: 2.835

4.  Detection of C',Calpha correlations in proteins using a new time- and sensitivity-optimal experiment.

Authors:  Donghan Lee; Beat Vögeli; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

5.  Unambiguous assignment of NMR protein backbone signals with a time-shared triple-resonance experiment.

Authors:  Dominique P Frueh; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2005-11       Impact factor: 2.835

6.  Carbon-detected NMR experiments to investigate structure and dynamics of biological macromolecules.

Authors:  Z Serber; C Richter; V Dötsch
Journal:  Chembiochem       Date:  2001-04-02       Impact factor: 3.164

7.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
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8.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

9.  Low-conductivity buffers for high-sensitivity NMR measurements.

Authors:  Alexander E Kelly; Horng D Ou; Richard Withers; Volker Dötsch
Journal:  J Am Chem Soc       Date:  2002-10-09       Impact factor: 15.419

10.  13C direct detection experiments on the paramagnetic oxidized monomeric copper, zinc superoxide dismutase.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

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  13 in total

1.  15N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins.

Authors:  Sandeep Chhabra; Patrick Fischer; Koh Takeuchi; Abhinav Dubey; Joshua J Ziarek; Andras Boeszoermenyi; Daniel Mathieu; Wolfgang Bermel; Norman E Davey; Gerhard Wagner; Haribabu Arthanari
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

Review 2.  A functional NMR for membrane proteins: dynamics, ligand binding, and allosteric modulation.

Authors:  Kirill Oxenoid; James J Chou
Journal:  Protein Sci       Date:  2016-03-28       Impact factor: 6.725

Review 3.  NMR and computational methods for molecular resolution of allosteric pathways in enzyme complexes.

Authors:  Kyle W East; Erin Skeens; Jennifer Y Cui; Helen B Belato; Brandon Mitchell; Rohaine Hsu; Victor S Batista; Giulia Palermo; George P Lisi
Journal:  Biophys Rev       Date:  2019-12-14

4.  Evaluation of 15N-detected H-N correlation experiments on increasingly large RNAs.

Authors:  Robbin Schnieders; Christian Richter; Sven Warhaut; Vanessa de Jesus; Sara Keyhani; Elke Duchardt-Ferner; Heiko Keller; Jens Wöhnert; Lars T Kuhn; Alexander L Breeze; Wolfgang Bermel; Harald Schwalbe; Boris Fürtig
Journal:  J Biomol NMR       Date:  2017-09-06       Impact factor: 2.835

5.  Measurement of residual dipolar couplings in methyl groups via carbon detection.

Authors:  Robert V Williams; Jeong-Yeh Yang; Kelley W Moremen; I Jonathan Amster; James H Prestegard
Journal:  J Biomol NMR       Date:  2019-04-30       Impact factor: 2.835

Review 6.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

7.  Perspective: revisiting the field dependence of TROSY sensitivity.

Authors:  Koh Takeuchi; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

Review 8.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2018

9.  Allosteric Motions of the CRISPR-Cas9 HNH Nuclease Probed by NMR and Molecular Dynamics.

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Journal:  J Am Chem Soc       Date:  2020-01-09       Impact factor: 15.419

10.  Direct detection of carbon and nitrogen nuclei for high-resolution analysis of intrinsically disordered proteins using NMR spectroscopy.

Authors:  E B Gibbs; R W Kriwacki
Journal:  Methods       Date:  2018-01-16       Impact factor: 3.608

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