Literature DB >> 31041649

Measurement of residual dipolar couplings in methyl groups via carbon detection.

Robert V Williams1,2, Jeong-Yeh Yang2, Kelley W Moremen2,3, I Jonathan Amster1, James H Prestegard4,5,6.   

Abstract

Residual dipolar couplings (RDCs) provide both structural and dynamical information useful in the characterization of biological macromolecules. While most data come from the interaction of simple pairs of directly bonded spin-1/2 nuclei (1H-15N, 1H-13C, 1H-1H), it is possible to acquire data from interactions among the multiple spins of 13C-labeled methyl groups (1H3-13C). This is especially important because of the advantages that observation of 13C-labeled methyl groups offers in working with very large molecules. Here we consider some of the options for measurement of methyl RDCs in large and often fully protonated proteins and arrive at a pulse sequence that exploits both J-modulation and direct detection of 13C. Its utility is illustrated by application to a fully protonated two domain fragment from the mammalian glycoprotein, Robo1, 13C-methyl-labeled in all valines.

Entities:  

Keywords:  1H–13C methyl RDCs; Carbon detection; Glycoproteins; Methyl groups; Proteins

Mesh:

Substances:

Year:  2019        PMID: 31041649      PMCID: PMC7020099          DOI: 10.1007/s10858-019-00245-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  19 in total

Review 1.  NMR structures of biomolecules using field oriented media and residual dipolar couplings.

Authors:  J H Prestegard; H M al-Hashimi; J R Tolman
Journal:  Q Rev Biophys       Date:  2000-11       Impact factor: 5.318

2.  An isotope labeling strategy for methyl TROSY spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

Review 3.  NMR spectroscopy of paramagnetic metalloproteins.

Authors:  Ivano Bertini; Claudio Luchinat; Giacomo Parigi; Roberta Pierattelli
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

4.  Multiplet component separation for measurement of methyl 13C-1H dipolar couplings in weakly aligned proteins.

Authors:  G Kontaxis; A Bax
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

5.  Independent valine and leucine isotope labeling in Escherichia coli protein overexpression systems.

Authors:  Roman J Lichtenecker; Katharina Weinhäupl; Lukas Reuther; Julia Schörghuber; Walther Schmid; Robert Konrat
Journal:  J Biomol NMR       Date:  2013-11       Impact factor: 2.835

Review 6.  Pseudocontact shifts in biomolecular NMR using paramagnetic metal tags.

Authors:  Christoph Nitsche; Gottfried Otting
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2016-12-01       Impact factor: 9.795

7.  Alanine methyl groups as NMR probes of molecular structure and dynamics in high-molecular-weight proteins.

Authors:  Raquel Godoy-Ruiz; Chenyun Guo; Vitali Tugarinov
Journal:  J Am Chem Soc       Date:  2010-12-07       Impact factor: 15.419

8.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

9.  Structural Aspects of Heparan Sulfate Binding to Robo1-Ig1-2.

Authors:  Qi Gao; Cheng-Yu Chen; Chengli Zong; Shuo Wang; Annapoorani Ramiah; Pradeep Prabhakar; Laura C Morris; Geert-Jan Boons; Kelley W Moremen; James H Prestegard
Journal:  ACS Chem Biol       Date:  2016-09-29       Impact factor: 5.100

10.  Nitrogen-detected TROSY yields comparable sensitivity to proton-detected TROSY for non-deuterated, large proteins under physiological salt conditions.

Authors:  Koh Takeuchi; Haribabu Arthanari; Misaki Imai; Gerhard Wagner; Ichio Shimada
Journal:  J Biomol NMR       Date:  2016-01-22       Impact factor: 2.835

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Authors:  Robert Creutznacher; Thorben Maass; Jasmin Dülfer; Clara Feldmann; Veronika Hartmann; Miranda Sophie Lane; Jan Knickmann; Leon Torben Westermann; Lars Thiede; Thomas J Smith; Charlotte Uetrecht; Alvaro Mallagaray; Christopher A Waudby; Stefan Taube; Thomas Peters
Journal:  Commun Biol       Date:  2022-06-09

Review 2.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

Review 3.  Opportunities and Challenges of Backbone, Sidechain, and RDC Experiments to Study Membrane Protein Dynamics in a Detergent-Free Lipid Environment Using Solution State NMR.

Authors:  Stefan Bibow
Journal:  Front Mol Biosci       Date:  2019-10-25
  3 in total

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