Literature DB >> 15928994

Detection of C',Calpha correlations in proteins using a new time- and sensitivity-optimal experiment.

Donghan Lee1, Beat Vögeli, Konstantin Pervushin.   

Abstract

Sensitivity- and time-optimal experiment, called COCAINE (CO-CA In- and aNtiphase spectra with sensitivity Enhancement), is proposed to correlate chemical shifts of (13)C' and (13)C(alpha) spins in proteins. A comparison of the sensitivity and duration of the experiment with the corresponding theoretical unitary bounds shows that the COCAINE experiment achieves maximum possible transfer efficiency in the shortest possible time, and in this sense the sequence is optimal. Compared to the standard HSQC, the COCAINE experiment delivers a 2.7-fold gain in sensitivity. This newly proposed experiment can be used for assignment of backbone resonances in large deuterated proteins effectively bridging (13)C' and (13)C(alpha) resonances in adjacent amino acids. Due to the spin-state selection employed, the COCAINE experiment can also be used for efficient measurements of one-bond couplings (e.g. scalar and residual dipolar couplings) in any two-spin system (e.g. the N/H in the backbone of protein).

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Year:  2005        PMID: 15928994     DOI: 10.1007/s10858-005-2361-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  20 in total

1.  A doublet-separated sensitivity-enhanced HSQC for the determination of scalar and dipolar one-bond J-couplings.

Authors:  F Cordier; A J Dingley; S Grzesiek
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

2.  Dissection of heteronuclear NMR experiments for studies of magnetization transfer efficiencies.

Authors:  D Braun; K Wüthrich; G Wider
Journal:  J Magn Reson       Date:  2003-11       Impact factor: 2.229

3.  Boundary of quantum evolution under decoherence.

Authors:  Navin Khaneja; Burkhard Luy; Steffen J Glaser
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

4.  Assignment of 1H(N), 15N, 13C(alpha), 13CO and 13C(beta) resonances in a 67 kDa p53 dimer using 4D-TROSY NMR spectroscopy.

Authors:  F A Mulder; A Ayed; D Yang; C H Arrowsmith; L E Kay
Journal:  J Biomol NMR       Date:  2000-10       Impact factor: 2.835

5.  Application of multiple-quantum line narrowing with simultaneous 1H and 13C constant-time scalar-coupling evolution in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments.

Authors:  G V Swapna; C B Rios; Z Shang; G T Montelione
Journal:  J Biomol NMR       Date:  1997-01       Impact factor: 2.835

6.  [13C]-constant-time [15N,1H]-TROSY-HNCA for sequential assignments of large proteins.

Authors:  M Salzmann; K Pervushin; G Wider; H Senn; K Wüthrich
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

7.  Attenuated T2 relaxation by mutual cancellation of dipole-dipole coupling and chemical shift anisotropy indicates an avenue to NMR structures of very large biological macromolecules in solution.

Authors:  K Pervushin; R Riek; G Wider; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1997-11-11       Impact factor: 11.205

8.  Pulse sequences for measurement of one-bond (15)N-(1)H coupling constants in the protein backbone.

Authors:  M H Lerche; A Meissner; F M Poulsen; O W Sørensen
Journal:  J Magn Reson       Date:  1999-09       Impact factor: 2.229

9.  Heteronuclear correlation experiments for the determination of one-bond coupling constants.

Authors:  P Andersson; K Nordstrand; M Sunnerhagen; E Liepinsh; I Turovskis; G Otting
Journal:  J Biomol NMR       Date:  1998-05       Impact factor: 2.835

10.  Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions.

Authors:  M Piotto; V Saudek; V Sklenár
Journal:  J Biomol NMR       Date:  1992-11       Impact factor: 2.835

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  11 in total

1.  Protein refolding is required for assembly of the type three secretion needle.

Authors:  Omer Poyraz; Holger Schmidt; Karsten Seidel; Friedmar Delissen; Christian Ader; Hezi Tenenboim; Christian Goosmann; Britta Laube; Andreas F Thünemann; Arturo Zychlinsky; Marc Baldus; Adam Lange; Christian Griesinger; Michael Kolbe
Journal:  Nat Struct Mol Biol       Date:  2010-06-13       Impact factor: 15.369

2.  Alternate 13C-12C labeling for complete mainchain resonance assignments using C alpha direct-detection with applicability toward fast relaxing protein systems.

Authors:  Koh Takeuchi; Zhen-Yu J Sun; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2008-12-24       Impact factor: 15.419

3.  Measuring membrane protein bond orientations in nanodiscs via residual dipolar couplings.

Authors:  Stefan Bibow; Marta G Carneiro; T Michael Sabo; Claudia Schwiegk; Stefan Becker; Roland Riek; Donghan Lee
Journal:  Protein Sci       Date:  2014-05-06       Impact factor: 6.725

4.  CACA-TOCSY with alternate 13C-12C labeling: a 13Calpha direct detection experiment for mainchain resonance assignment, dihedral angle information, and amino acid type identification.

Authors:  Koh Takeuchi; Dominique P Frueh; Zhen-Yu J Sun; Sebastian Hiller; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-04-10       Impact factor: 2.835

5.  Speeding up direct (15)N detection: hCaN 2D NMR experiment.

Authors:  Maayan Gal; Katherine A Edmonds; Alexander G Milbradt; Koh Takeuchi; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2011-10-30       Impact factor: 2.835

6.  Nitrogen-detected CAN and CON experiments as alternative experiments for main chain NMR resonance assignments.

Authors:  Koh Takeuchi; Gregory Heffron; Zhen-Yu J Sun; Dominique P Frueh; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-06-17       Impact factor: 2.835

7.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

8.  Nitrogen-detected TROSY yields comparable sensitivity to proton-detected TROSY for non-deuterated, large proteins under physiological salt conditions.

Authors:  Koh Takeuchi; Haribabu Arthanari; Misaki Imai; Gerhard Wagner; Ichio Shimada
Journal:  J Biomol NMR       Date:  2016-01-22       Impact factor: 2.835

9.  In situ temperature-jump dynamic nuclear polarization: enhanced sensitivity in two dimensional 13C-13C correlation spectroscopy in solution.

Authors:  Chan-Gyu Joo; Andrew Casey; Christopher J Turner; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2009-01-14       Impact factor: 15.419

10.  Selective backbone labeling of proteins using 1,2-13C2-pyruvate as carbon source.

Authors:  Chenyun Guo; Chun Geng; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2009-05-26       Impact factor: 2.835

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