Literature DB >> 29151202

NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Caitlin M Quinn1,2, Mingzhang Wang1,2, Tatyana Polenova3,4.   

Abstract

As a result of profound gains in sensitivity and resolution afforded by ultrahigh magnetic fields, transformative applications in the fields of structural biology and materials science are being realized. The development of dual low temperature superconducting (LTS)/high-temperature superconducting (HTS) magnets has enabled the achievement of magnetic fields above 1 GHz (23.5 T), which will open doors to an unprecedented new range of applications. In this contribution, we discuss the promise of ultrahigh field magnetic resonance. We highlight several methodological developments pertinent at high-magnetic fields including measurement of 1H-1H distances and 1H chemical shift anisotropy in the solid state as well as studies of quadrupolar nuclei such as 17O. Higher magnetic fields have advanced heteronuclear detection in solution NMR, valuable for applications including metabolomics and disordered proteins, as well as expanded use of proton detection in the solid state in conjunction with ultrafast magic angle spinning. We also present several recent applications to structural studies of the AP205 bacteriophage, the M2 channel from Influenza A, and biomaterials such as human bone. Gains in sensitivity and resolution from increased field strengths will enable advanced applications of NMR spectroscopy including in vivo studies of whole cells and intact virions.

Entities:  

Keywords:  Biomaterials; Fast magic angle spinning; Nonuniform sampling; Proton detection; Quadrupolar nuclei; Structure determination; TROSY; Ultrahigh magnetic fields; Whole cell NMR

Mesh:

Substances:

Year:  2018        PMID: 29151202      PMCID: PMC6217836          DOI: 10.1007/978-1-4939-7386-6_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  146 in total

1.  Determination of multiple ***φ***-torsion angles in proteins by selective and extensive (13)C labeling and two-dimensional solid-state NMR.

Authors:  M Hong
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Oxygen-17 NMR spectroscopy: basic principles and applications. Part II.

Authors:  Ioannis P Gerothanassis
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-02-13       Impact factor: 9.795

3.  Measurement of site-specific 13C spin-lattice relaxation in a crystalline protein.

Authors:  Józef R Lewandowski; Julien Sein; Hans Jürgen Sass; Stephan Grzesiek; Martin Blackledge; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

Review 4.  A Unique Tool for Cellular Structural Biology: In-cell NMR.

Authors:  Enrico Luchinat; Lucia Banci
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

5.  Proton Transverse Relaxation as a Sensitive Probe for Structure Determination in Solid Proteins.

Authors:  Petra Rovó; Kristof Grohe; Karin Giller; Stefan Becker; Rasmus Linser
Journal:  Chemphyschem       Date:  2015-10-01       Impact factor: 3.102

6.  A proton-detected 4D solid-state NMR experiment for protein structure determination.

Authors:  Matthias Huber; Sebastian Hiller; Paul Schanda; Matthias Ernst; Anja Böckmann; René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2011-02-15       Impact factor: 3.102

7.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

8.  High-sensitivity observation of dipolar exchange and NOEs between exchangeable protons in proteins by 3D solid-state NMR spectroscopy.

Authors:  Eric K Paulson; Corey R Morcombe; Vadim Gaponenko; Barbara Dancheck; R Andrew Byrd; Kurt W Zilm
Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

9.  (1)H-detected solid-state NMR of proteins entrapped in bioinspired silica: a new tool for biomaterials characterization.

Authors:  Enrico Ravera; Linda Cerofolini; Tommaso Martelli; Alexandra Louka; Marco Fragai; Claudio Luchinat
Journal:  Sci Rep       Date:  2016-06-09       Impact factor: 4.379

10.  Site-resolved measurement of microsecond-to-millisecond conformational-exchange processes in proteins by solid-state NMR spectroscopy.

Authors:  Martin Tollinger; Astrid C Sivertsen; Beat H Meier; Matthias Ernst; Paul Schanda
Journal:  J Am Chem Soc       Date:  2012-08-28       Impact factor: 15.419

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  10 in total

Review 1.  Use of paramagnetic systems to speed-up NMR data acquisition and for structural and dynamic studies.

Authors:  Vojč Kocman; Giacomo M Di Mauro; Gianluigi Veglia; Ayyalusamy Ramamoorthy
Journal:  Solid State Nucl Magn Reson       Date:  2019-07-12       Impact factor: 2.293

2.  Isotopic Labeling of Eukaryotic Membrane Proteins for NMR Studies of Interactions and Dynamics.

Authors:  Igor Dikiy; Lindsay D Clark; Kevin H Gardner; Daniel M Rosenbaum
Journal:  Methods Enzymol       Date:  2018-12-18       Impact factor: 1.600

3.  Two decades of progress in structural and dynamic studies of amyloids by solid-state NMR.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2019-07-09       Impact factor: 2.229

Review 4.  Functional amyloids from bacterial biofilms - structural properties and interaction partners.

Authors:  Ümit Akbey; Maria Andreasen
Journal:  Chem Sci       Date:  2022-05-06       Impact factor: 9.969

Review 5.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

6.  Sensitivity boosts by the CPMAS CryoProbe for challenging biological assemblies.

Authors:  Alia Hassan; Caitlin M Quinn; Jochem Struppe; Ivan V Sergeyev; Chunting Zhang; Changmiao Guo; Brent Runge; Theint Theint; Hanh H Dao; Christopher P Jaroniec; Mélanie Berbon; Alons Lends; Birgit Habenstein; Antoine Loquet; Rainer Kuemmerle; Barbara Perrone; Angela M Gronenborn; Tatyana Polenova
Journal:  J Magn Reson       Date:  2019-12-23       Impact factor: 2.229

Review 7.  Residue-based pharmacophore approaches to study protein-protein interactions.

Authors:  Rojan Shrestha; Jorge Eduardo Fajardo; Andras Fiser
Journal:  Curr Opin Struct Biol       Date:  2021-01-22       Impact factor: 6.809

8.  Polymorphic Forms of Valinomycin Investigated by NMR Crystallography.

Authors:  Jiří Czernek; Jiří Brus
Journal:  Int J Mol Sci       Date:  2020-07-11       Impact factor: 5.923

9.  New applications of solid-state NMR in structural biology.

Authors:  Patrick C A van der Wel
Journal:  Emerg Top Life Sci       Date:  2018-02-23

Review 10.  Glycan structures and their interactions with proteins. A NMR view.

Authors:  Ana Gimeno; Pablo Valverde; Ana Ardá; Jesús Jiménez-Barbero
Journal:  Curr Opin Struct Biol       Date:  2019-12-10       Impact factor: 6.809

  10 in total

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