Literature DB >> 31327528

Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Haribabu Arthanari1, Koh Takeuchi2, Abhinav Dubey3, Gerhard Wagner4.   

Abstract

The first recognition of protein breathing was more than 50 years ago. Today, we are able to detect the multitude of interaction modes, structural polymorphisms, and binding-induced changes in protein structure that direct function. Solution-state NMR spectroscopy has proved to be a powerful technique, not only to obtain high-resolution structures of proteins, but also to provide unique insights into the functional dynamics of proteins. Here, we summarize recent technical landmarks in solution NMR that have enabled characterization of key biological macromolecular systems. These methods have been fundamental to atomic resolution structure determination and quantitative analysis of dynamics over a wide range of time scales by NMR. The ability of NMR to detect lowly populated protein conformations and transiently formed complexes plays a critical role in its ability to elucidate functionally important structural features of proteins and their dynamics.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31327528      PMCID: PMC6778509          DOI: 10.1016/j.sbi.2019.06.005

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  124 in total

Review 1.  NMR with multiple receivers.

Authors:  Eriks Kupče
Journal:  Top Curr Chem       Date:  2013

2.  Entropy in molecular recognition by proteins.

Authors:  José A Caro; Kyle W Harpole; Vignesh Kasinath; Jackwee Lim; Jeffrey Granja; Kathleen G Valentine; Kim A Sharp; A Joshua Wand
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-05       Impact factor: 11.205

3.  Ultrashort Broadband Cooperative Pulses for Multidimensional Biomolecular NMR Experiments.

Authors:  Sam Asami; Wolfgang Kallies; Johannes C Günther; Maria Stavropoulou; Steffen J Glaser; Michael Sattler
Journal:  Angew Chem Int Ed Engl       Date:  2018-04-25       Impact factor: 15.336

4.  Fluorine Pseudocontact Shifts Used for Characterizing the Protein-Ligand Interaction Mode in the Limit of NMR Intermediate Exchange.

Authors:  Jia Gao; E Liang; Rongsheng Ma; Fudong Li; Yixiang Liu; Jiuyang Liu; Ling Jiang; Conggang Li; Haiming Dai; Jihui Wu; Xuncheng Su; Wei He; Ke Ruan
Journal:  Angew Chem Int Ed Engl       Date:  2017-09-19       Impact factor: 15.336

5.  Interpolating and extrapolating with hmsIST: seeking a tmax for optimal sensitivity, resolution and frequency accuracy.

Authors:  Sven G Hyberts; Scott A Robson; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2017-03-22       Impact factor: 2.835

6.  β2-Adrenergic Receptor Conformational Response to Fusion Protein in the Third Intracellular Loop.

Authors:  Matthew T Eddy; Tatiana Didenko; Raymond C Stevens; Kurt Wüthrich
Journal:  Structure       Date:  2016-11-10       Impact factor: 5.006

7.  Assignment of methyl NMR resonances of a 52 kDa protein with residue-specific 4D correlation maps.

Authors:  Subrata H Mishra; Dominique P Frueh
Journal:  J Biomol NMR       Date:  2015-05-08       Impact factor: 2.835

8.  Conformational dynamics of a G-protein α subunit is tightly regulated by nucleotide binding.

Authors:  David Goricanec; Ralf Stehle; Pascal Egloff; Simina Grigoriu; Andreas Plückthun; Gerhard Wagner; Franz Hagn
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-13       Impact factor: 11.205

9.  Methyl-selective isotope labeling using α-ketoisovalerate for the yeast Pichia pastoris recombinant protein expression system.

Authors:  Rika Suzuki; Masayoshi Sakakura; Masaki Mori; Moe Fujii; Satoko Akashi; Hideo Takahashi
Journal:  J Biomol NMR       Date:  2018-06-05       Impact factor: 2.835

10.  Selective methyl labeling of eukaryotic membrane proteins using cell-free expression.

Authors:  Rasmus Linser; Vladimir Gelev; Franz Hagn; Haribabu Arthanari; Sven G Hyberts; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2014-06-27       Impact factor: 15.419

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  5 in total

1.  Deciphering collaborative sidechain motions in proteins during molecular dynamics simulations.

Authors:  Bruck Taddese; Antoine Garnier; Hervé Abdi; Daniel Henrion; Marie Chabbert
Journal:  Sci Rep       Date:  2020-09-28       Impact factor: 4.379

Review 2.  α-Crystallins in the Vertebrate Eye Lens: Complex Oligomers and Molecular Chaperones.

Authors:  Marc A Sprague-Piercy; Megan A Rocha; Ashley O Kwok; Rachel W Martin
Journal:  Annu Rev Phys Chem       Date:  2020-12-15       Impact factor: 12.703

3.  Quantifying and visualizing weak interactions between anions and proteins.

Authors:  Binhan Yu; Channing C Pletka; Junji Iwahara
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

Review 4.  Discrete-state stochastic kinetic models for target DNA search by proteins: Theory and experimental applications.

Authors:  Junji Iwahara; Anatoly B Kolomeisky
Journal:  Biophys Chem       Date:  2020-12-10       Impact factor: 2.352

Review 5.  Chemical Properties Determine Solubility and Stability in βγ-Crystallins of the Eye Lens.

Authors:  Megan A Rocha; Marc A Sprague-Piercy; Ashley O Kwok; Kyle W Roskamp; Rachel W Martin
Journal:  Chembiochem       Date:  2021-02-10       Impact factor: 3.164

  5 in total

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