Literature DB >> 16967194

Measurement of 15N relaxation in deuterated amide groups in proteins using direct nitrogen detection.

Paul R Vasos1, Jennifer B Hall, Rainer Kümmerle, David Fushman.   

Abstract

15N chemical shielding tensors contain useful structural information, and their knowledge is essential for accurate analysis of protein backbone dynamics. The anisotropic component (CSA) of 15N chemical shielding can be obtained from 15N relaxation measurements in solution. However, the predominant contribution to nitrogen relaxation from 15N-(1)H dipolar coupling in amide groups limits the sensitivity of these measurements to the actual CSA values. Here we present nitrogen-detected NMR experiments for measuring 15N relaxation in deuterated amide groups in proteins, where the dipolar contribution to 15N relaxation is significantly reduced by the deuteration. Under these conditions nitrogen spin relaxation becomes a sensitive probe for variations in 15N chemical shielding tensors. Using the nitrogen direct-detection experiments we measured the rates of longitudinal and transverse 15N relaxation for backbone amides in protein G in D(2)O at 11.7 T. The measured relaxation rates are validated by comparing the overall rotational diffusion tensor obtained from these data with that from the conventional 15N relaxation measurements in H(2)O. This analysis revealed a 17-24 degree angle between the NH-bond and the unique axis of the 15N chemical shielding tensor.

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Year:  2006        PMID: 16967194     DOI: 10.1007/s10858-006-9063-4

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  20 in total

1.  A novel strategy for the assignment of side-chain resonances in completely deuterated large proteins using 13C spectroscopy.

Authors:  Alexander Eletsky; Osvaldo Moreira; Helena Kovacs; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2003-06       Impact factor: 2.835

2.  Efficient and accurate determination of the overall rotational diffusion tensor of a molecule from (15)N relaxation data using computer program ROTDIF.

Authors:  Olivier Walker; Ranjani Varadan; David Fushman
Journal:  J Magn Reson       Date:  2004-06       Impact factor: 2.229

3.  Chemical shift anisotropy tensors of carbonyl, nitrogen, and amide proton nuclei in proteins through cross-correlated relaxation in NMR spectroscopy.

Authors:  Karine Loth; Philippe Pelupessy; Geoffrey Bodenhausen
Journal:  J Am Chem Soc       Date:  2005-04-27       Impact factor: 15.419

4.  A phase cycle scheme that significantly suppresses offset-dependent artifacts in the R2-CPMG 15N relaxation experiment.

Authors:  Grover N B Yip; Erik R P Zuiderweg
Journal:  J Magn Reson       Date:  2004-11       Impact factor: 2.229

5.  The effect of noncollinearity of 15N-1H dipolar and 15N CSA tensors and rotational anisotropy on 15N relaxation, CSA/dipolar cross correlation, and TROSY.

Authors:  D Fushman; D Cowburn
Journal:  J Biomol NMR       Date:  1999-02       Impact factor: 2.835

6.  Separating structure and dynamics in CSA/DD cross-correlated relaxation: a case study on trehalose and ubiquitin.

Authors:  K E Kövér; G Batta
Journal:  J Magn Reson       Date:  2001-06       Impact factor: 2.229

7.  Limited variations in 15N CSA magnitudes and orientations in ubiquitin are revealed by joint analysis of longitudinal and transverse NMR relaxation.

Authors:  Peter Damberg; Jüri Jarvet; Astrid Gräslund
Journal:  J Am Chem Soc       Date:  2005-02-16       Impact factor: 15.419

8.  Determination of the backbone mobility of ribonuclease T1 and its 2'GMP complex using molecular dynamics simulations and NMR relaxation data.

Authors:  D Fushman; O Ohlenschläger; H Rüterjans
Journal:  J Biomol Struct Dyn       Date:  1994-06

9.  13C-13C NOESY: an attractive alternative for studying large macromolecules.

Authors:  Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Detlef Moskau; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2004-01-21       Impact factor: 15.419

10.  13C direct detection experiments on the paramagnetic oxidized monomeric copper, zinc superoxide dismutase.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Rainer Kümmerle; Roberta Pierattelli
Journal:  J Am Chem Soc       Date:  2003-12-31       Impact factor: 15.419

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  8 in total

1.  A study on the influence of fast amide exchange on the accuracy of (15)N relaxation rate constants.

Authors:  Simon Jurt; Oliver Zerbe
Journal:  J Biomol NMR       Date:  2012-11-10       Impact factor: 2.835

2.  Speeding up direct (15)N detection: hCaN 2D NMR experiment.

Authors:  Maayan Gal; Katherine A Edmonds; Alexander G Milbradt; Koh Takeuchi; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2011-10-30       Impact factor: 2.835

3.  Nitrogen-detected CAN and CON experiments as alternative experiments for main chain NMR resonance assignments.

Authors:  Koh Takeuchi; Gregory Heffron; Zhen-Yu J Sun; Dominique P Frueh; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-06-17       Impact factor: 2.835

4.  Density functional calculations of backbone 15N shielding tensors in beta-sheet and turn residues of protein G.

Authors:  Ling Cai; Daniel S Kosov; David Fushman
Journal:  J Biomol NMR       Date:  2011-02-09       Impact factor: 2.835

5.  Nitrogen detected TROSY at high field yields high resolution and sensitivity for protein NMR.

Authors:  Koh Takeuchi; Haribabu Arthanari; Ichio Shimada; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2015-10-23       Impact factor: 2.835

6.  Density functional calculations of 15N chemical shifts in solvated dipeptides.

Authors:  Ling Cai; David Fushman; Daniel S Kosov
Journal:  J Biomol NMR       Date:  2008-05-17       Impact factor: 2.835

7.  Nitrogen-detected TROSY yields comparable sensitivity to proton-detected TROSY for non-deuterated, large proteins under physiological salt conditions.

Authors:  Koh Takeuchi; Haribabu Arthanari; Misaki Imai; Gerhard Wagner; Ichio Shimada
Journal:  J Biomol NMR       Date:  2016-01-22       Impact factor: 2.835

8.  TROSY of side-chain amides in large proteins.

Authors:  Aizhuo Liu; Lishan Yao; Yue Li; Honggao Yan
Journal:  J Magn Reson       Date:  2007-02-14       Impact factor: 2.229

  8 in total

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