| Literature DB >> 25873010 |
Stéphanie Baert-Desurmont1,2,3, Françoise Charbonnier1,2,3, Estelle Houivet4,5, Lorena Ippolito1,3, Jacques Mauillon2, Marion Bougeard1, Caroline Abadie1,6, David Malka7, Jacqueline Duffour8, Françoise Desseigne9, Chrystelle Colas10, Pascal Pujol11, Sophie Lejeune12, Catherine Dugast6, Bruno Buecher13, Laurence Faivre14, Dominique Leroux15, Paul Gesta16, Isabelle Coupier11, Rosine Guimbaud17, Pascaline Berthet18, Sylvie Manouvrier12, Estelle Cauchin19, Fabienne Prieur20, Pierre Laurent-Puig21, Marine Lebrun20, Philippe Jonveaux22, Jean Chiesa23, Olivier Caron7, Marie-Emmanuelle Morin-Meschin24, Florence Polycarpe-Osaer18, Sophie Giraud25, Aziz Zaanan21, Delphine Bonnet26, Ludovic Mansuy22, Valérie Bonadona9, Salima El Chehadeh14, François Duhoux27, Marion Gauthier-Villars13, Jean-Christophe Saurin28, Marie-Agnès Collonge-Rame29, Laurence Brugières7, Qing Wang9, Brigitte Bressac-de Paillerets7, Jean-Marc Rey11, Christine Toulas17, Marie-Pierre Buisine30, Myriam Bronner22, Joanna Sokolowska22, Agnès Hardouin18, Anne-Françoise Cailleux5, Hakim Sebaoui31, Julien Blot31, Julie Tinat1,2,3, Jacques Benichou4, Thierry Frebourg1,2,3.
Abstract
To determine if the at-risk single-nucleotide polymorphism (SNP) alleles for colorectal cancer (CRC) could contribute to clinical situations suggestive of an increased genetic risk for CRC, we performed a prospective national case-control study based on highly selected patients (CRC in two first-degree relatives, one before 61 years of age; or CRC diagnosed before 51 years of age; or multiple primary CRCs, the first before 61 years of age; exclusion of Lynch syndrome and polyposes) and controls without personal or familial history of CRC. SNPs were genotyped using SNaPshot, and statistical analyses were performed using Pearson's χ(2) test, Cochran-Armitage test of trend and logistic regression. We included 1029 patients and 350 controls. We confirmed the association of CRC risk with four SNPs, with odds ratio (OR) higher than previously reported: rs16892766 on 8q23.3 (OR: 1.88, 95% confidence interval (CI): 1.30-2.72; P=0.0007); rs4779584 on 15q13.3 (OR: 1.42, CI: 1.11-1.83; P=0.0061) and rs4939827 and rs58920878/Novel 1 on 18q21.1 (OR: 1.49, CI: 1.13-1.98; P=0.007 and OR: 1.49, CI: 1.14-1.95; P=0.0035). We found a significant (P<0.0001) cumulative effect of the at-risk alleles or genotypes with OR at 1.62 (CI: 1.10-2.37), 2.09 (CI: 1.43-3.07), 2.87 (CI: 1.76-4.70) and 3.88 (CI: 1.72-8.76) for 1, 2, 3 and at least 4 at-risk alleles, respectively, and OR at 1.71 (CI: 1.18-2.46), 2.29 (CI: 1.55-3.38) and 6.21 (CI: 2.67-14.42) for 1, 2 and 3 at-risk genotypes, respectively. Combination of SNPs may therefore explain a fraction of clinical situations suggestive of an increased risk for CRC.Entities:
Mesh:
Year: 2015 PMID: 25873010 PMCID: PMC4795220 DOI: 10.1038/ejhg.2015.72
Source DB: PubMed Journal: Eur J Hum Genet ISSN: 1018-4813 Impact factor: 4.246
Inclusion and exclusion criteria
| • CRC in two first-degree relatives, one being diagnosed before 61 years of age |
| • |
| • |
| • Lynch syndrome, as defined by the presence in the patient of a deleterious germline MMR gene mutation and/or a RER+/MSI tumour, in the context of a suggestive presentation (familial history, early age of onset) |
| • Adenomatous polyposis, as defined by more than 10 histologically proven adenomas |
| • Hamartomatous polyposis, as defined by the presence of histologically proven hamartomas |
Clinical characteristics of the 1029 patients included in the study
| Patients with CRC | 952 (92.5%) |
| 1 | 901 (94.6%) |
| 2 | 44 (4.6%) |
| 3 | 7 (0.7%) |
| Median age at CRC diagnosis (min; max) | 44 (15; 62) |
| Mean age of CRC (SD) | 43.1 (8.3) |
| Caecum and right colon | 188 (19.7%) |
| Transverse colon | 34 (3.6%) |
| Left colon and sigmoid | 350 (36.8%) |
| Recto-sigmoid junction | 103 (10.8%) |
| Rectum | 261 (27.4%) |
| Not indicated | 16 (1.7%) |
| Patients with adenomas | 280 (27.2%) |
Other patients presented with advanced adenomas.
Up to 10 adenomas.
Assessment of associations between colorectal tumour risk and each of the seven at-risk alleles of SNPsa
Assessment of associations between colorectal cancer risk and each of the three at-risk alleles of SNPsa in patients selected according to the occurrence of CRC in two first-degree relatives, one being diagnosed before 61 years of age
| 8q23.3 | ||||||
| | ||||||
| 311 (88.8) | 292 (80.4) | 1 | ||||
| 39 (11.2) | 71 (19.6) | |||||
| 15q13.3 | ||||||
| | ||||||
| 223 (63.7) | 204 (56.2) | 1 | ||||
| 127 (36.3) | 159 (43.8) | 0.1142 | 1.28 | 0.94–1.74 | ||
| 18q21.1 | ||||||
| | ||||||
| 110 (31.4) | 78 (21.5) | 1 | ||||
| 240 (68.6) | 285 (78.5) | 1.24–2.46 |
Bold-type figures correspond to P<0.05; **P<0.0167 (significance threshold according to Bonferroni's correction for multiple testing with three SNPs tested).
Rs16892766 on 8q23.3, rs4779584 on 15q13.3 and rs58920878/Novel 1 on 18q21.1.
According to Pearson's χ2 test.
Estimated from unconditional logistic regression with case–control status as the response and with adjustment for sex.
Assessment of associations between colorectal cancer risk and each of the three at-risk alleles of SNPsa in patients with CRC diagnosed before 51 years of age or advanced colorectal adenoma before 41 years of age
| | ||||||
| 311 (88.8) | 711 (80.2) | 1 | ||||
| 39 (11.2) | 176 (19.8) | |||||
| | ||||||
| 223 (63.7) | 481 (54.2) | 1 | ||||
| 127 (36.3) | 406 (45.8) | |||||
| | ||||||
| 110 (31.4) | 210 (23.7) | 1 | ||||
| 240 (68.6) | 676 (76.3) |
Bold-type figures correspond to P<0.05; **P<0.0167 (significance threshold according to Bonferroni's correction for multiple testing with three SNPs tested).
Rs16892766 on 8q23.3, rs4779584 on 15q13.3 and rs58920878/Novel 1 on 18q21.1.
According to Pearson's χ2 test.
Estimated from unconditional logistic regression with case–control status as the response and with adjustment for sex.
Assessment of associations between colorectal tumour risk and the number of at-risk alleles or genotypes at the 8q23.3, 15q13.3 and 18q21.1 loci
| 0 | 60 (17.1) | 95 (9.2) | 1 | ||
| 1 | 131 (37.4) | 335 (32.6) | |||
| 2 | 117 (33.4) | 391 (38.0) | <0.0001 | ||
| 3 | 34 (9.7) | 157 (15.3) | |||
| ≥4 | 8 (2.3) | 50 (4.9) | |||
| 0 | 60 (17.1) | 95 (9.2) | 1 | ||
| 1 | 181 (51.7) | 489 (47.6) | |||
| 2 | 102 (29.1) | 374 (36.4) | <0.0001 | ||
| 3 | 7 (2.1) | 70 (6.8) | |||
Bold-type figures correspond to P<0.0001 using the Cochran-Armitage test of trend.
According to Pearson's χ2 test.
Estimated from unconditional logistic regression with case/control status as the response and with adjustment for sex.
Corresponding to 4 or 5 at-risk alleles.
Figure 1Number of at-risk alleles or genotypes in cases and controls. (a) Distribution of the number of at-risk alleles in cases and controls. (b) OR according to the number of at-risk alleles. (c) Distribution of the number of at-risk genotypes in cases and controls. (d) OR according to the number of at-risk genotypes.