Literature DB >> 25104389

Crystal structure of elongation factor 4 bound to a clockwise ratcheted ribosome.

Matthieu G Gagnon1, Jinzhong Lin2, David Bulkley3, Thomas A Steitz4.   

Abstract

Elongation factor 4 (EF4/LepA) is a highly conserved guanosine triphosphatase translation factor. It was shown to promote back-translocation of tRNAs on posttranslocational ribosome complexes and to compete with elongation factor G for interaction with pretranslocational ribosomes, inhibiting the elongation phase of protein synthesis. Here, we report a crystal structure of EF4-guanosine diphosphate bound to the Thermus thermophilus ribosome with a P-site tRNA at 2.9 angstroms resolution. The C-terminal domain of EF4 reaches into the peptidyl transferase center and interacts with the acceptor stem of the peptidyl-tRNA in the P site. The ribosome is in an unusual state of ratcheting with the 30S subunit rotated clockwise relative to the 50S subunit, resulting in a remodeled decoding center. The structure is consistent with EF4 functioning either as a back-translocase or a ribosome sequester.
Copyright © 2014, American Association for the Advancement of Science.

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Year:  2014        PMID: 25104389      PMCID: PMC9153294          DOI: 10.1126/science.1253525

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   63.714


  20 in total

Review 1.  Evolution of a molecular switch: universal bacterial GTPases regulate ribosome function.

Authors:  C E Caldon; P Yoong; P E March
Journal:  Mol Microbiol       Date:  2001-07       Impact factor: 3.501

2.  Recognition of cognate transfer RNA by the 30S ribosomal subunit.

Authors:  J M Ogle; D E Brodersen; W M Clemons ; M J Tarry; A P Carter; V Ramakrishnan
Journal:  Science       Date:  2001-05-04       Impact factor: 47.728

3.  The conserved protein EF4 (LepA) modulates the elongation cycle of protein synthesis.

Authors:  Hanqing Liu; Chunlai Chen; Haibo Zhang; Jaskiran Kaur; Yale E Goldman; Barry S Cooperman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-19       Impact factor: 11.205

Review 4.  Ribosome-associated GTPases: the role of RNA for GTPase activation.

Authors:  Nina Clementi; Norbert Polacek
Journal:  RNA Biol       Date:  2010-09-01       Impact factor: 4.652

5.  A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation.

Authors:  Sean R Connell; Maya Topf; Yan Qin; Daniel N Wilson; Thorsten Mielke; Paola Fucini; Knud H Nierhaus; Christian M T Spahn
Journal:  Nat Struct Mol Biol       Date:  2008-09       Impact factor: 15.369

6.  Structures of the bacterial ribosome in classical and hybrid states of tRNA binding.

Authors:  Jack A Dunkle; Leyi Wang; Michael B Feldman; Arto Pulk; Vincent B Chen; Gary J Kapral; Jonas Noeske; Jane S Richardson; Scott C Blanchard; Jamie H Doudna Cate
Journal:  Science       Date:  2011-05-20       Impact factor: 47.728

7.  Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis.

Authors:  Shinichiro Shoji; Brian D Janssen; Christopher S Hayes; Kurt Fredrick
Journal:  Biochimie       Date:  2009-11-17       Impact factor: 4.079

Review 8.  The many levels of control on bacterial selenoprotein synthesis.

Authors:  Satoko Yoshizawa; August Böck
Journal:  Biochim Biophys Acta       Date:  2009-03-27

9.  Interrupted catalysis: the EF4 (LepA) effect on back-translocation.

Authors:  Hanqing Liu; Dongli Pan; Markus Pech; Barry S Cooperman
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

Review 10.  The paradox of elongation factor 4: highly conserved, yet of no physiological significance?

Authors:  Dejiu Zhang; Yan Qin
Journal:  Biochem J       Date:  2013-06-01       Impact factor: 3.857

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  25 in total

1.  EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome.

Authors:  Dejiu Zhang; Kaige Yan; Guangqiao Liu; Guangtao Song; Jiejian Luo; Yi Shi; Erchao Cheng; Shan Wu; Taijiao Jiang; Jizhong Lou; Ning Gao; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2016-01-25       Impact factor: 15.369

Review 2.  Mechanisms of ribosome rescue in bacteria.

Authors:  Kenneth C Keiler
Journal:  Nat Rev Microbiol       Date:  2015-04-13       Impact factor: 60.633

Review 3.  Taking a Step Back from Back-Translocation: an Integrative View of LepA/EF4's Cellular Function.

Authors:  Jalyce L E Heller; Rajashekhar Kamalampeta; Hans-Joachim Wieden
Journal:  Mol Cell Biol       Date:  2017-05-31       Impact factor: 4.272

4.  Ribosomal protein L7/L12 is required for GTPase translation factors EF-G, RF3, and IF2 to bind in their GTP state to 70S ribosomes.

Authors:  Markus A Carlson; Bassam G Haddad; Amanda J Weis; Colby S Blackwood; Catherine D Shelton; Michelle E Wuerth; Justin D Walter; Paul Clint Spiegel
Journal:  FEBS J       Date:  2017-04-10       Impact factor: 5.542

5.  EF4 reveals the energy barrier for tRNA back-translocation in the peptidyl transferase center.

Authors:  Guangtao Song; Yan Qin
Journal:  RNA Biol       Date:  2016-07-29       Impact factor: 4.652

6.  Step back for seminal translation.

Authors:  Shu-Bing Qian
Journal:  Nat Struct Mol Biol       Date:  2016-05-04       Impact factor: 15.369

7.  Conserved GTPase LepA (Elongation Factor 4) functions in biogenesis of the 30S subunit of the 70S ribosome.

Authors:  Michelle R Gibbs; Kyung-Mee Moon; Menglin Chen; Rohan Balakrishnan; Leonard J Foster; Kurt Fredrick
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

8.  Elongation Factor Tu Switch I Element is a Gate for Aminoacyl-tRNA Selection.

Authors:  Dylan Girodat; Scott C Blanchard; Hans-Joachim Wieden; Karissa Y Sanbonmatsu
Journal:  J Mol Biol       Date:  2020-02-13       Impact factor: 5.469

9.  Structure of BipA in GTP form bound to the ratcheted ribosome.

Authors:  Veerendra Kumar; Yun Chen; Rya Ero; Tofayel Ahmed; Jackie Tan; Zhe Li; Andrew See Weng Wong; Shashi Bhushan; Yong-Gui Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

10.  Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome.

Authors:  Veerendra Kumar; Rya Ero; Tofayel Ahmed; Kwok Jian Goh; Yin Zhan; Shashi Bhushan; Yong-Gui Gao
Journal:  J Biol Chem       Date:  2016-05-02       Impact factor: 5.157

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