Literature DB >> 21930951

The conserved protein EF4 (LepA) modulates the elongation cycle of protein synthesis.

Hanqing Liu1, Chunlai Chen, Haibo Zhang, Jaskiran Kaur, Yale E Goldman, Barry S Cooperman.   

Abstract

EF4 (LepA), a strongly conserved protein, is important for bacterial growth and functional protein biosynthesis under certain conditions and is quite similar structurally to the translocase EF-G. The elongation cycle in protein synthesis is characterized by ribosome oscillation between pretranslocation (PRE) and posttranslocation (POST) complexes. Here, using ensemble single turnover and equilibrium experiments, as well as single molecule FRET measurements, we demonstrate that EF4 can compete with EF-G for binding to the PRE complex. Such EF4 binding results in formation of a complex, denoted X(3), that effectively sequesters a catalytically active ribosome, leading to a transient inhibition of elongation that provides a mechanism for optimization of functional protein synthesis. Earlier [Liu H, et al. (2010) J Mol Biol 396:1043-1052] we demonstrated that EF4 also reacts with POST complex, leading to the formation of a complex, I(3), that appears to be identical with X(3). Our present results strongly suggest that PRE complex is the principal target of EF4 action on translation, rather than POST complex as had been previously supposed.

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Year:  2011        PMID: 21930951      PMCID: PMC3182707          DOI: 10.1073/pnas.1103820108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  Kinetically competent intermediates in the translocation step of protein synthesis.

Authors:  Dongli Pan; Stanislav V Kirillov; Barry S Cooperman
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

2.  Spontaneous reverse movement of mRNA-bound tRNA through the ribosome.

Authors:  Andrey L Konevega; Niels Fischer; Yuri P Semenkov; Holger Stark; Wolfgang Wintermeyer; Marina V Rodnina
Journal:  Nat Struct Mol Biol       Date:  2007-03-18       Impact factor: 15.369

3.  Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.

Authors:  Gong Zhang; Magdalena Hubalewska; Zoya Ignatova
Journal:  Nat Struct Mol Biol       Date:  2009-02-08       Impact factor: 15.369

4.  A new tRNA intermediate revealed on the ribosome during EF4-mediated back-translocation.

Authors:  Sean R Connell; Maya Topf; Yan Qin; Daniel N Wilson; Thorsten Mielke; Paola Fucini; Knud H Nierhaus; Christian M T Spahn
Journal:  Nat Struct Mol Biol       Date:  2008-09       Impact factor: 15.369

Review 5.  What recent ribosome structures have revealed about the mechanism of translation.

Authors:  T Martin Schmeing; V Ramakrishnan
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

Review 6.  Structure and dynamics of a processive Brownian motor: the translating ribosome.

Authors:  Joachim Frank; Ruben L Gonzalez
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

7.  Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis.

Authors:  Shinichiro Shoji; Brian D Janssen; Christopher S Hayes; Kurt Fredrick
Journal:  Biochimie       Date:  2009-11-17       Impact factor: 4.079

8.  Synthesis and functional activity of tRNAs labeled with fluorescent hydrazides in the D-loop.

Authors:  Dongli Pan; Haiou Qin; Barry S Cooperman
Journal:  RNA       Date:  2008-12-31       Impact factor: 4.942

9.  Interrupted catalysis: the EF4 (LepA) effect on back-translocation.

Authors:  Hanqing Liu; Dongli Pan; Markus Pech; Barry S Cooperman
Journal:  J Mol Biol       Date:  2010-01-04       Impact factor: 5.469

10.  The structure of the ribosome with elongation factor G trapped in the posttranslocational state.

Authors:  Yong-Gui Gao; Maria Selmer; Christine M Dunham; Albert Weixlbaumer; Ann C Kelley; V Ramakrishnan
Journal:  Science       Date:  2009-10-30       Impact factor: 47.728

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  27 in total

1.  EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome.

Authors:  Dejiu Zhang; Kaige Yan; Guangqiao Liu; Guangtao Song; Jiejian Luo; Yi Shi; Erchao Cheng; Shan Wu; Taijiao Jiang; Jizhong Lou; Ning Gao; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2016-01-25       Impact factor: 15.369

2.  The conserved translation factor LepA is required for optimal synthesis of a porin family in Mycobacterium smegmatis.

Authors:  Skye R S Fishbein; Francesca G Tomasi; Ian D Wolf; Charles L Dulberger; Albert Wang; Hasmik Keshishian; Luke Wallace; Steven A Carr; Thomas R Ioerger; E Hesper Rego; Eric J Rubin
Journal:  J Bacteriol       Date:  2020-12-23       Impact factor: 3.490

Review 3.  EF-G and EF4: translocation and back-translocation on the bacterial ribosome.

Authors:  Hiroshi Yamamoto; Yan Qin; John Achenbach; Chengmin Li; Jaroslaw Kijek; Christian M T Spahn; Knud H Nierhaus
Journal:  Nat Rev Microbiol       Date:  2013-12-23       Impact factor: 60.633

Review 4.  Mechanisms of ribosome rescue in bacteria.

Authors:  Kenneth C Keiler
Journal:  Nat Rev Microbiol       Date:  2015-04-13       Impact factor: 60.633

Review 5.  Taking a Step Back from Back-Translocation: an Integrative View of LepA/EF4's Cellular Function.

Authors:  Jalyce L E Heller; Rajashekhar Kamalampeta; Hans-Joachim Wieden
Journal:  Mol Cell Biol       Date:  2017-05-31       Impact factor: 4.272

6.  West syndrome caused by homozygous variant in the evolutionary conserved gene encoding the mitochondrial elongation factor GUF1.

Authors:  Ali Abdullah Alfaiz; Verena Müller; Nadia Boutry-Kryza; Dorothée Ville; Nicolas Guex; Julitta de Bellescize; Clotilde Rivier; Audrey Labalme; Vincent des Portes; Patrick Edery; Marianne Till; Ioannis Xenarios; Damien Sanlaville; Johannes M Herrmann; Gaétan Lesca; Alexandre Reymond
Journal:  Eur J Hum Genet       Date:  2015-10-21       Impact factor: 4.246

7.  EF-G catalyzes tRNA translocation by disrupting interactions between decoding center and codon-anticodon duplex.

Authors:  Guangqiao Liu; Guangtao Song; Danyang Zhang; Dejiu Zhang; Zhikai Li; Zhixin Lyu; Jianshu Dong; John Achenbach; Weimin Gong; Xin Sheng Zhao; Knud H Nierhaus; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2014-08-10       Impact factor: 15.369

8.  EF4 reveals the energy barrier for tRNA back-translocation in the peptidyl transferase center.

Authors:  Guangtao Song; Yan Qin
Journal:  RNA Biol       Date:  2016-07-29       Impact factor: 4.652

9.  Conserved GTPase LepA (Elongation Factor 4) functions in biogenesis of the 30S subunit of the 70S ribosome.

Authors:  Michelle R Gibbs; Kyung-Mee Moon; Menglin Chen; Rohan Balakrishnan; Leonard J Foster; Kurt Fredrick
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

10.  Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome.

Authors:  Veerendra Kumar; Rya Ero; Tofayel Ahmed; Kwok Jian Goh; Yin Zhan; Shashi Bhushan; Yong-Gui Gao
Journal:  J Biol Chem       Date:  2016-05-02       Impact factor: 5.157

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