Literature DB >> 27137929

Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome.

Veerendra Kumar1, Rya Ero2, Tofayel Ahmed2, Kwok Jian Goh2, Yin Zhan2, Shashi Bhushan3, Yong-Gui Gao4.   

Abstract

Elongation factor 4 (EF4) is a member of the family of ribosome-dependent translational GTPase factors, along with elongation factor G and BPI-inducible protein A. Although EF4 is highly conserved in bacterial, mitochondrial, and chloroplast genomes, its exact biological function remains controversial. Here we present the cryo-EM reconstitution of the GTP form of EF4 bound to the ribosome with P and E site tRNAs at 3.8-Å resolution. Interestingly, our structure reveals an unrotated ribosome rather than a clockwise-rotated ribosome, as observed in the presence of EF4-GDP and P site tRNA. In addition, we also observed a counterclockwise-rotated form of the above complex at 5.7-Å resolution. Taken together, our results shed light on the interactions formed between EF4, the ribosome, and the P site tRNA and illuminate the GTPase activation mechanism at previously unresolved detail.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  EF4; LepA; cryo-EM; ribosome structure; translation; translation elongation factor; translational GTPase factor; translocation

Mesh:

Substances:

Year:  2016        PMID: 27137929      PMCID: PMC4933213          DOI: 10.1074/jbc.M116.725945

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  37 in total

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3.  Structure of BipA in GTP form bound to the ratcheted ribosome.

Authors:  Veerendra Kumar; Yun Chen; Rya Ero; Tofayel Ahmed; Jackie Tan; Zhe Li; Andrew See Weng Wong; Shashi Bhushan; Yong-Gui Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-17       Impact factor: 11.205

4.  Elongation factor 4 remodels the A-site tRNA on the ribosome.

Authors:  Matthieu G Gagnon; Jinzhong Lin; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

5.  The mechanism for activation of GTP hydrolysis on the ribosome.

Authors:  Rebecca M Voorhees; T Martin Schmeing; Ann C Kelley; V Ramakrishnan
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Authors:  Yong-Gui Gao; Maria Selmer; Christine M Dunham; Albert Weixlbaumer; Ann C Kelley; V Ramakrishnan
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8.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
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9.  Ribosomal elongation factor 4 promotes cell death associated with lethal stress.

Authors:  Liping Li; Yuzhi Hong; Gan Luan; Michael Mosel; Muhammad Malik; Karl Drlica; Xilin Zhao
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10.  EF4 knockout E. coli cells exhibit lower levels of cellular biosynthesis under acidic stress.

Authors:  Fang Yang; Zhikai Li; Jia Hao; Yan Qin
Journal:  Protein Cell       Date:  2014-07       Impact factor: 14.870

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  9 in total

Review 1.  Taking a Step Back from Back-Translocation: an Integrative View of LepA/EF4's Cellular Function.

Authors:  Jalyce L E Heller; Rajashekhar Kamalampeta; Hans-Joachim Wieden
Journal:  Mol Cell Biol       Date:  2017-05-31       Impact factor: 4.272

2.  EF4 reveals the energy barrier for tRNA back-translocation in the peptidyl transferase center.

Authors:  Guangtao Song; Yan Qin
Journal:  RNA Biol       Date:  2016-07-29       Impact factor: 4.652

3.  Conserved GTPase LepA (Elongation Factor 4) functions in biogenesis of the 30S subunit of the 70S ribosome.

Authors:  Michelle R Gibbs; Kyung-Mee Moon; Menglin Chen; Rohan Balakrishnan; Leonard J Foster; Kurt Fredrick
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

4.  Ribosome assembly defects subvert initiation Factor3 mediated scrutiny of bona fide start signal.

Authors:  Himanshu Sharma; B Anand
Journal:  Nucleic Acids Res       Date:  2019-12-02       Impact factor: 16.971

5.  The GTPase BipA expressed at low temperature in Escherichia coli assists ribosome assembly and has chaperone-like activity.

Authors:  Eunsil Choi; Jihwan Hwang
Journal:  J Biol Chem       Date:  2018-10-10       Impact factor: 5.157

Review 6.  Similarity and diversity of translational GTPase factors EF-G, EF4, and BipA: From structure to function.

Authors:  Rya Ero; Veerendra Kumar; Yun Chen; Yong-Gui Gao
Journal:  RNA Biol       Date:  2016-06-20       Impact factor: 4.652

7.  Translation Elongation Factor 4 (LepA) Contributes to Tetracycline Susceptibility by Stalling Elongating Ribosomes.

Authors:  Bin Liu; Chunlai Chen
Journal:  Antimicrob Agents Chemother       Date:  2018-07-27       Impact factor: 5.191

8.  In silico analysis of bacterial translation factors reveal distinct translation event specific pI values.

Authors:  Soma Jana; Partha P Datta
Journal:  BMC Genomics       Date:  2021-03-29       Impact factor: 3.969

9.  Translational GTPase BipA Is Involved in the Maturation of a Large Subunit of Bacterial Ribosome at Suboptimal Temperature.

Authors:  Kwok Jian Goh; Rya Ero; Xin-Fu Yan; Jung-Eun Park; Binu Kundukad; Jun Zheng; Siu Kwan Sze; Yong-Gui Gao
Journal:  Front Microbiol       Date:  2021-07-13       Impact factor: 5.640

  9 in total

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