Literature DB >> 28342293

Ribosomal protein L7/L12 is required for GTPase translation factors EF-G, RF3, and IF2 to bind in their GTP state to 70S ribosomes.

Markus A Carlson1, Bassam G Haddad1, Amanda J Weis1, Colby S Blackwood1, Catherine D Shelton1, Michelle E Wuerth1, Justin D Walter1, Paul Clint Spiegel1.   

Abstract

Ribosomal protein L7/L12 is associated with translation initiation, elongation, and termination by the 70S ribosome. The guanosine 5' triphosphate hydrolase (GTPase) activity of elongation factor G (EF-G) requires the presence of L7/L12, which is critical for ribosomal translocation. Here, we have developed new methods for the complete depletion of L7/L12 from Escherichia coli 70S ribosomes to analyze the effect of L7/L12 on the activities of the GTPase factors EF-G, RF3, IF2, and LepA. Upon removal of L7/L12 from ribosomes, the GTPase activities of EF-G, RF3, and IF2 decreased to basal levels, while the activity of LepA decreased marginally. Upon reconstitution of ribosomes with recombinant L12, the GTPase activities of all GTPases returned to full activity. Moreover, ribosome binding assays indicated that EF-G, RF3, and IF2 require L7/L12 for stable binding in the GTP state, and LepA retained > 50% binding. Lastly, an EF-G∆G' truncation mutant possessed ribosome-dependent GTPase activity, which was insensitive to L7/L12. Our results indicate that L7/L12 is required for stable binding of ribosome-dependent GTPases that harbor direct interactions to the L7/L12 C-terminal domains, either through a G' domain (EF-G, RF3) or a unique N-terminal domain (IF2). Furthermore, we hypothesize this interaction is concomitant with counterclockwise ribosomal intersubunit rotation, which is required for translocation, initiation, and post-termination.
© 2017 Federation of European Biochemical Societies.

Entities:  

Keywords:  GTPase; elongation factor G; protein L7/L12; ribosome; translation

Mesh:

Substances:

Year:  2017        PMID: 28342293      PMCID: PMC5568246          DOI: 10.1111/febs.14067

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  54 in total

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Journal:  Biochemistry       Date:  2002-10-15       Impact factor: 3.162

3.  Atomic mutagenesis reveals A2660 of 23S ribosomal RNA as key to EF-G GTPase activation.

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4.  A novel domain in translational GTPase BipA mediates interaction with the 70S ribosome and influences GTP hydrolysis.

Authors:  Megan A deLivron; Heeren S Makanji; Maura C Lane; Victoria L Robinson
Journal:  Biochemistry       Date:  2009-11-10       Impact factor: 3.162

5.  Conserved GTPase LepA (Elongation Factor 4) functions in biogenesis of the 30S subunit of the 70S ribosome.

Authors:  Michelle R Gibbs; Kyung-Mee Moon; Menglin Chen; Rohan Balakrishnan; Leonard J Foster; Kurt Fredrick
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

6.  Elongation factor-dependent reactions of ribosomes deprived of proteins L7 and L12.

Authors:  V E Koteliansky; S P Domogatsky; A T Gudkov; A S Spirin
Journal:  FEBS Lett       Date:  1977-01-15       Impact factor: 4.124

7.  Activities of ribosomal cores deprived of proteins L7, L10, L11 and L12.

Authors:  J P Ballesta; D Vazquez
Journal:  FEBS Lett       Date:  1974-11-15       Impact factor: 4.124

8.  Gel electrophoretic studies on ribosomal proteins L7/L12 and the Escherichia coli 50 S subunit.

Authors:  H Tokimatsu; W A Strycharz; A E Dahlberg
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9.  The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli.

Authors:  Rohan Balakrishnan; Kenji Oman; Shinichiro Shoji; Ralf Bundschuh; Kurt Fredrick
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Authors:  Gemma Catherine Atkinson
Journal:  BMC Genomics       Date:  2015-02-14       Impact factor: 3.969

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Review 2.  Roles of elusive translational GTPases come to light and inform on the process of ribosome biogenesis in bacteria.

Authors:  Michelle R Gibbs; Kurt Fredrick
Journal:  Mol Microbiol       Date:  2017-12-29       Impact factor: 3.501

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4.  Alterations in the ribosomal protein bL12 of E. coli affecting the initiation, elongation and termination of protein synthesis.

Authors:  Adam D Younkin; Steven T Gregory; Michael O'Connor
Journal:  Biochimie       Date:  2020-06-20       Impact factor: 4.079

5.  Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database.

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Review 6.  The Diseased Mitoribosome.

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Journal:  FEBS Lett       Date:  2020-12-22       Impact factor: 4.124

7.  Structural analysis of 70S ribosomes by cross-linking/mass spectrometry reveals conformational plasticity.

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8.  Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.

Authors:  Michael Graf; Paul Huter; Cristina Maracci; Miroslav Peterek; Marina V Rodnina; Daniel N Wilson
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9.  Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast.

Authors:  Yinuo J Wang; Pavanapuresan P Vaidyanathan; Maria F Rojas-Duran; Namrata D Udeshi; Kristen M Bartoli; Steven A Carr; Wendy V Gilbert
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10.  Leucine 232 and hydrophobic residues at the ribosomal P stalk binding site are critical for biological activity of ricin.

Authors:  Yijun Zhou; Xiao-Ping Li; Jennifer N Kahn; John E McLaughlin; Nilgun E Tumer
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