Literature DB >> 27472653

EF4 reveals the energy barrier for tRNA back-translocation in the peptidyl transferase center.

Guangtao Song1, Yan Qin1,2.   

Abstract

In the translating ribosomal complex, transfer RNA (tRNA) is stabilized in the ribosome by its anticodon stem-loop (ASL) and 3'-CCA end through base-pairing interactions with mRNA codon on the small subunit and rRNA in the peptidyl transferase center (PTC) of large subunit, respectively.Elongation factor 4 (EF4), a highly conserved translational GTPase, has been identified to trigger back-translocation. Early this year, we reported high resolution cryo-EM structures of EF4 in complex with Escherichia coli 70S ribosome in pre- and post-translocational states with direct observations that EF4 disrupts the base pairs between the 3'-end of peptidyl-tRNA and the P-loop of rRNA in PTC. Here, we focus on the novel molecular mechanism how EF4 catalyzes back-translocation, and discuss the common and specific energy barriers for forward- and back-translocation.

Entities:  

Keywords:  Back-translocation; EF4; PTC; energy barrier; ribosome; tRNA

Year:  2016        PMID: 27472653      PMCID: PMC5056771          DOI: 10.1080/15476286.2016.1215795

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  35 in total

1.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

2.  Peptidyl-tRNA regulates the GTPase activity of translation factors.

Authors:  Andrey V Zavialov; Måns Ehrenberg
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

3.  Locking and unlocking of ribosomal motions.

Authors:  Mikel Valle; Andrey Zavialov; Jayati Sengupta; Urmila Rawat; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2003-07-11       Impact factor: 41.582

4.  The membrane-bound GTPase Guf1 promotes mitochondrial protein synthesis under suboptimal conditions.

Authors:  Heike Bauerschmitt; Soledad Funes; Johannes M Herrmann
Journal:  J Biol Chem       Date:  2008-04-28       Impact factor: 5.157

5.  EF-G catalyzes tRNA translocation by disrupting interactions between decoding center and codon-anticodon duplex.

Authors:  Guangqiao Liu; Guangtao Song; Danyang Zhang; Dejiu Zhang; Zhikai Li; Zhixin Lyu; Jianshu Dong; John Achenbach; Weimin Gong; Xin Sheng Zhao; Knud H Nierhaus; Yan Qin
Journal:  Nat Struct Mol Biol       Date:  2014-08-10       Impact factor: 15.369

6.  Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome.

Authors:  Veerendra Kumar; Rya Ero; Tofayel Ahmed; Kwok Jian Goh; Yin Zhan; Shashi Bhushan; Yong-Gui Gao
Journal:  J Biol Chem       Date:  2016-05-02       Impact factor: 5.157

7.  Elongation factor 4 remodels the A-site tRNA on the ribosome.

Authors:  Matthieu G Gagnon; Jinzhong Lin; Thomas A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

8.  GUF1, a gene encoding a novel evolutionarily conserved GTPase in budding yeast.

Authors:  G L Kiser; T A Weinert
Journal:  Yeast       Date:  1995-10       Impact factor: 3.239

9.  The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.

Authors:  T Martin Schmeing; Rebecca M Voorhees; Ann C Kelley; Yong-Gui Gao; Frank V Murphy; John R Weir; V Ramakrishnan
Journal:  Science       Date:  2009-10-15       Impact factor: 47.728

10.  Ribosomal elongation factor 4 promotes cell death associated with lethal stress.

Authors:  Liping Li; Yuzhi Hong; Gan Luan; Michael Mosel; Muhammad Malik; Karl Drlica; Xilin Zhao
Journal:  MBio       Date:  2014-12-09       Impact factor: 7.867

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