Literature DB >> 24907900

An orthogonal ribosome-tRNA pair via engineering of the peptidyl transferase center.

Naohiro Terasaka1, Gosuke Hayashi2, Takayuki Katoh3, Hiroaki Suga4.   

Abstract

The Watson-Crick base pairs between the 3'-terminal end of tRNAs and ribosomal RNA in the peptidyl transferase center are universally conserved. Here, we report that the introduction of compensatory mutations to Escherichia coli RNAs in this site leads to an orthogonal system independent of the wild-type counterpart, as demonstrated via the production of two peptide sequences from a single mRNA. This work thus identifies a new way to reprogram the genetic code.

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Year:  2014        PMID: 24907900     DOI: 10.1038/nchembio.1549

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  25 in total

1.  A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase.

Authors:  C Kao; M Zheng; S Rüdisser
Journal:  RNA       Date:  1999-09       Impact factor: 4.942

2.  Flexizymes for genetic code reprogramming.

Authors:  Yuki Goto; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Protoc       Date:  2011-05-12       Impact factor: 13.491

3.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

4.  Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression.

Authors:  Anat Bashan; Ilana Agmon; Raz Zarivach; Frank Schluenzen; Joerg Harms; Rita Berisio; Heike Bartels; Francois Franceschi; Tamar Auerbach; Harly A S Hansen; Elizaveta Kossoy; Maggie Kessler; Ada Yonath
Journal:  Mol Cell       Date:  2003-01       Impact factor: 17.970

5.  A highly flexible tRNA acylation method for non-natural polypeptide synthesis.

Authors:  Hiroshi Murakami; Atsushi Ohta; Hiroshi Ashigai; Hiroaki Suga
Journal:  Nat Methods       Date:  2006-05       Impact factor: 28.547

6.  Synthesis of polyester by means of genetic code reprogramming.

Authors:  Atsushi Ohta; Hiroshi Murakami; Eri Higashimura; Hiroaki Suga
Journal:  Chem Biol       Date:  2007-12

Review 7.  A structural understanding of the dynamic ribosome machine.

Authors:  Thomas A Steitz
Journal:  Nat Rev Mol Cell Biol       Date:  2008-03       Impact factor: 94.444

8.  A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome.

Authors:  R R Samaha; R Green; H F Noller
Journal:  Nature       Date:  1995-09-28       Impact factor: 49.962

9.  Sites of interaction of the CCA end of peptidyl-tRNA with 23S rRNA.

Authors:  D Moazed; H F Noller
Journal:  Proc Natl Acad Sci U S A       Date:  1991-05-01       Impact factor: 11.205

10.  The interaction networks of structured RNAs.

Authors:  A Lescoute; E Westhof
Journal:  Nucleic Acids Res       Date:  2006-11-28       Impact factor: 16.971

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  15 in total

1.  Dual Genetic Encoding of Acetyl-lysine and Non-deacetylatable Thioacetyl-lysine Mediated by Flexizyme.

Authors:  Hai Xiong; Noah M Reynolds; Chenguang Fan; Markus Englert; Denton Hoyer; Scott J Miller; Dieter Söll
Journal:  Angew Chem Int Ed Engl       Date:  2016-02-23       Impact factor: 15.336

2.  Development of a reporter peptide that catalytically produces a fluorescent signal through α-complementation.

Authors:  Kotaro Nishiyama; Norikazu Ichihashi; Yasuaki Kazuta; Tetsuya Yomo
Journal:  Protein Sci       Date:  2015-04-02       Impact factor: 6.725

Review 3.  tRNA engineering for manipulating genetic code.

Authors:  Takayuki Katoh; Yoshihiko Iwane; Hiroaki Suga
Journal:  RNA Biol       Date:  2017-09-06       Impact factor: 4.652

Review 4.  Rewriting the Genetic Code.

Authors:  Takahito Mukai; Marc J Lajoie; Markus Englert; Dieter Söll
Journal:  Annu Rev Microbiol       Date:  2017-07-11       Impact factor: 15.500

Review 5.  Repurposing the translation apparatus for synthetic biology.

Authors:  Benjamin J Des Soye; Jaymin R Patel; Farren J Isaacs; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2015-07-15       Impact factor: 8.822

Review 6.  Repurposing ribosomes for synthetic biology.

Authors:  Yi Liu; Do Soon Kim; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2017-09-01       Impact factor: 8.822

7.  [Dual genetic encoding of acetyl-lysine and non-deacetylatablethioacetyl-lysine mediated by flexizyme].

Authors:  Hai Xiong; Noah M Reynolds; Chenguang Fan; Markus Englert; Denton Hoyer; Scott J Miller; Dieter Söll
Journal:  Angew Chem Weinheim Bergstr Ger       Date:  2016-02-23

Review 8.  Overcoming Challenges in Engineering the Genetic Code.

Authors:  M J Lajoie; D Söll; G M Church
Journal:  J Mol Biol       Date:  2015-09-05       Impact factor: 5.469

9.  Controlling orthogonal ribosome subunit interactions enables evolution of new function.

Authors:  Wolfgang H Schmied; Zakir Tnimov; Chayasith Uttamapinant; Christopher D Rae; Stephen D Fried; Jason W Chin
Journal:  Nature       Date:  2018-12-05       Impact factor: 49.962

Review 10.  Expanding and reprogramming the genetic code.

Authors:  Jason W Chin
Journal:  Nature       Date:  2017-10-04       Impact factor: 49.962

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