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Literature DB >> 26348789

Overcoming Challenges in Engineering the Genetic Code.

Abstract

Withstanding 3.5 billion years of genetic drift, the canonical genetic code remains such a fundamental foundation for the complexity of life that it is highly conserved across all three phylogenetic domains. Genome engineering technologies are now making it possible to rationally change the genetic code, offering resistance to viruses, genetic isolation from horizontal gene transfer, and prevention of environmental escape by genetically modified organisms. We discuss the biochemical, genetic, and technological challenges that must be overcome in order to engineer the genetic code.

Entities: Chemical Disease Gene Mutation Species

Keywords: expanded genetic code; genome engineering; genomically recoded organism (GRO)

Mesh：

Year: 2015 PMID： 26348789 PMCID： PMC4779434 DOI： 10.1016/j.jmb.2015.09.003

Source DB: PubMed Journal: J Mol Biol ISSN： 0022-2836 Impact factor: 5.469

186 in total

Review 1. Principles for the buffering of genetic variation.

Authors: J L Hartman; B Garvik; L Hartwell
Journal: Science Date: 2001-02-09 Impact factor: 47.728

2. Adaptation of an orthogonal archaeal leucyl-tRNA and synthetase pair for four-base, amber, and opal suppression.

Authors: J Christopher Anderson; Peter G Schultz
Journal: Biochemistry Date: 2003-08-19 Impact factor: 3.162

3. Unnatural base pairs for specific transcription.

Authors: T Ohtsuki; M Kimoto; M Ishikawa; T Mitsui; I Hirao; S Yokoyama
Journal: Proc Natl Acad Sci U S A Date: 2001-04-24 Impact factor: 11.205

4. Causes and effects of N-terminal codon bias in bacterial genes.

Authors: Daniel B Goodman; George M Church; Sriram Kosuri
Journal: Science Date: 2013-09-26 Impact factor: 47.728

5. Developer's and user's guide to Clotho v2.0 A software platform for the creation of synthetic biological systems.

Authors: Bing Xia; Swapnil Bhatia; Ben Bubenheim; Maisam Dadgar; Douglas Densmore; J Christopher Anderson
Journal: Methods Enzymol Date: 2011 Impact factor: 1.600

Review 6. Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.

Authors: G Eggertsson; D Söll
Journal: Microbiol Rev Date: 1988-09

7. Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca.

Authors: Karsten Temme; Dehua Zhao; Christopher A Voigt
Journal: Proc Natl Acad Sci U S A Date: 2012-04-16 Impact factor: 11.205

8. Deep sequencing reveals as-yet-undiscovered small RNAs in Escherichia coli.

Authors: Atsuko Shinhara; Motomu Matsui; Kiriko Hiraoka; Wataru Nomura; Reiko Hirano; Kenji Nakahigashi; Masaru Tomita; Hirotada Mori; Akio Kanai
Journal: BMC Genomics Date: 2011-08-24 Impact factor: 3.969

9. An expanded set of amino acid analogs for the ribosomal translation of unnatural peptides.

Authors: Matthew C T Hartman; Kristopher Josephson; Chi-Wang Lin; Jack W Szostak
Journal: PLoS One Date: 2007-10-03 Impact factor: 3.240

10. Evolution of phage with chemically ambiguous proteomes.

Authors: Jamie M Bacher; James J Bull; Andrew D Ellington
Journal: BMC Evol Biol Date: 2003-12-10 Impact factor: 3.260

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Review 2. Achieving Controlled Biomolecule-Biomaterial Conjugation.

Authors: Christopher D Spicer; E Thomas Pashuck; Molly M Stevens
Journal: Chem Rev Date: 2018-07-24 Impact factor: 60.622

3. PERSIA for Direct Fluorescence Measurements of Transcription, Translation, and Enzyme Activity in Cell-Free Systems.

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Review 4. Ribosomal frameshifting and transcriptional slippage: From genetic steganography and cryptography to adventitious use.

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Journal: Nucleic Acids Res Date: 2016-07-19 Impact factor: 16.971

5. Emergent rules for codon choice elucidated by editing rare arginine codons in Escherichia coli.

Authors: Michael G Napolitano; Matthieu Landon; Christopher J Gregg; Marc J Lajoie; Lakshmi Govindarajan; Joshua A Mosberg; Gleb Kuznetsov; Daniel B Goodman; Oscar Vargas-Rodriguez; Farren J Isaacs; Dieter Söll; George M Church
Journal: Proc Natl Acad Sci U S A Date: 2016-09-06 Impact factor: 11.205

Review 6. Rewriting the Genetic Code.

Authors: Takahito Mukai; Marc J Lajoie; Markus Englert; Dieter Söll
Journal: Annu Rev Microbiol Date: 2017-07-11 Impact factor: 15.500

7. Overcoming Near-Cognate Suppression in a Release Factor 1-Deficient Host with an Improved Nitro-Tyrosine tRNA Synthetase.

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