Literature DB >> 28980641

Expanding and reprogramming the genetic code.

Jason W Chin1,2.   

Abstract

Nature uses a limited, conservative set of amino acids to synthesize proteins. The ability to genetically encode an expanded set of building blocks with new chemical and physical properties is transforming the study, manipulation and evolution of proteins, and is enabling diverse applications, including approaches to probe, image and control protein function, and to precisely engineer therapeutics. Underpinning this transformation are strategies to engineer and rewire translation. Emerging strategies aim to reprogram the genetic code so that noncanonical biopolymers can be synthesized and evolved, and to test the limits of our ability to engineer the translational machinery and systematically recode genomes.

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Year:  2017        PMID: 28980641     DOI: 10.1038/nature24031

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  119 in total

1.  Adaptation of an orthogonal archaeal leucyl-tRNA and synthetase pair for four-base, amber, and opal suppression.

Authors:  J Christopher Anderson; Peter G Schultz
Journal:  Biochemistry       Date:  2003-08-19       Impact factor: 3.162

2.  Addition of an alpha-hydroxy acid to the genetic code of bacteria.

Authors:  Jiantao Guo; Jiangyun Wang; J Christopher Anderson; Peter G Schultz
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

3.  Exploring the potential impact of an expanded genetic code on protein function.

Authors:  Han Xiao; Fariborz Nasertorabi; Sei-Hyun Choi; Gye Won Han; Sean A Reed; Raymond C Stevens; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-18       Impact factor: 11.205

4.  Expanding the genetic code of Escherichia coli with phosphoserine.

Authors:  Hee-Sung Park; Michael J Hohn; Takuya Umehara; Li-Tao Guo; Edith M Osborne; Jack Benner; Christopher J Noren; Jesse Rinehart; Dieter Söll
Journal:  Science       Date:  2011-08-26       Impact factor: 47.728

5.  A semisynthetic organism engineered for the stable expansion of the genetic alphabet.

Authors:  Yorke Zhang; Brian M Lamb; Aaron W Feldman; Anne Xiaozhou Zhou; Thomas Lavergne; Lingjun Li; Floyd E Romesberg
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-23       Impact factor: 11.205

6.  Rational design of an orthogonal tryptophanyl nonsense suppressor tRNA.

Authors:  Randall A Hughes; Andrew D Ellington
Journal:  Nucleic Acids Res       Date:  2010-06-22       Impact factor: 16.971

7.  RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites.

Authors:  David B F Johnson; Jianfeng Xu; Zhouxin Shen; Jeffrey K Takimoto; Matthew D Schultz; Robert J Schmitz; Zheng Xiang; Joseph R Ecker; Steven P Briggs; Lei Wang
Journal:  Nat Chem Biol       Date:  2011-09-18       Impact factor: 15.040

8.  Genetic code expansion enables live-cell and super-resolution imaging of site-specifically labeled cellular proteins.

Authors:  Chayasith Uttamapinant; Jonathan D Howe; Kathrin Lang; Václav Beránek; Lloyd Davis; Mohan Mahesh; Nicholas P Barry; Jason W Chin
Journal:  J Am Chem Soc       Date:  2015-04-01       Impact factor: 15.419

9.  Genetically encoded optochemical probes for simultaneous fluorescence reporting and light activation of protein function with two-photon excitation.

Authors:  Ji Luo; Rajendra Uprety; Yuta Naro; Chungjung Chou; Duy P Nguyen; Jason W Chin; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2014-10-23       Impact factor: 15.419

10.  Evolved orthogonal ribosomes enhance the efficiency of synthetic genetic code expansion.

Authors:  Kaihang Wang; Heinz Neumann; Sew Y Peak-Chew; Jason W Chin
Journal:  Nat Biotechnol       Date:  2007-06-24       Impact factor: 54.908

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  170 in total

Review 1.  Development of photolabile protecting groups and their application to the optochemical control of cell signaling.

Authors:  Anirban Bardhan; Alexander Deiters
Journal:  Curr Opin Struct Biol       Date:  2019-05-25       Impact factor: 6.809

2.  Genetically Incorporating Two Distinct Post-translational Modifications into One Protein Simultaneously.

Authors:  Sumana Venkat; Jourdan Sturges; Alleigh Stahman; Caroline Gregory; Qinglei Gan; Chenguang Fan
Journal:  ACS Synth Biol       Date:  2018-01-17       Impact factor: 5.110

3.  Mechanism and site of action of big dynorphin on ASIC1a.

Authors:  Christian B Borg; Nina Braun; Stephanie A Heusser; Yasmin Bay; Daniel Weis; Iacopo Galleano; Camilla Lund; Weihua Tian; Linda M Haugaard-Kedström; Eric P Bennett; Timothy Lynagh; Kristian Strømgaard; Jacob Andersen; Stephan A Pless
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-12       Impact factor: 11.205

4.  A "Quenchergenic" Chemoselective Protein Labeling Strategy.

Authors:  Partha Sarathi Addy; Yunan Zheng; James S Italia; Abhishek Chatterjee
Journal:  Chembiochem       Date:  2019-05-03       Impact factor: 3.164

Review 5.  Reprogramming the genetic code.

Authors:  Daniel de la Torre; Jason W Chin
Journal:  Nat Rev Genet       Date:  2020-12-14       Impact factor: 53.242

6.  Culmination of a half-century quest reveals insight into mutant tRNA-mediated frameshifting after tRNA departure from the decoding site.

Authors:  John F Atkins
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-19       Impact factor: 11.205

Review 7.  Achieving Controlled Biomolecule-Biomaterial Conjugation.

Authors:  Christopher D Spicer; E Thomas Pashuck; Molly M Stevens
Journal:  Chem Rev       Date:  2018-07-24       Impact factor: 60.622

8.  Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs.

Authors:  Daniele Cervettini; Shan Tang; Stephen D Fried; Julian C W Willis; Louise F H Funke; Lucy J Colwell; Jason W Chin
Journal:  Nat Biotechnol       Date:  2020-04-13       Impact factor: 54.908

9.  Reversible and Tunable Photoswitching of Protein Function through Genetic Encoding of Azobenzene Amino Acids in Mammalian Cells.

Authors:  Ji Luo; Subhas Samanta; Marino Convertino; Nikolay V Dokholyan; Alexander Deiters
Journal:  Chembiochem       Date:  2018-10-02       Impact factor: 3.164

10.  Resurrecting the Bacterial Tyrosyl-tRNA Synthetase/tRNA Pair for Expanding the Genetic Code of Both E. coli and Eukaryotes.

Authors:  James S Italia; Christopher Latour; Chester J J Wrobel; Abhishek Chatterjee
Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

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