Literature DB >> 26186264

Repurposing the translation apparatus for synthetic biology.

Benjamin J Des Soye1,2,3,4, Jaymin R Patel5,6, Farren J Isaacs5,6, Michael C Jewett1,2,3,4,7.   

Abstract

The translation system (the ribosome and associated factors) is the cell's factory for protein synthesis. The extraordinary catalytic capacity of the protein synthesis machinery has driven extensive efforts to harness it for novel functions. For example, pioneering efforts have demonstrated that it is possible to genetically encode more than the 20 natural amino acids and that this encoding can be a powerful tool to expand the chemical diversity of proteins. Here, we discuss recent advances in efforts to expand the chemistry of living systems, highlighting improvements to the molecular machinery and genomically recoded organisms, applications of cell-free systems, and extensions of these efforts to include eukaryotic systems. The transformative potential of repurposing the translation apparatus has emerged as one of the defining opportunities at the interface of chemical and synthetic biology.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26186264      PMCID: PMC5113029          DOI: 10.1016/j.cbpa.2015.06.008

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  72 in total

1.  Cell-free translation reconstituted with purified components.

Authors:  Y Shimizu; A Inoue; Y Tomari; T Suzuki; T Yokogawa; K Nishikawa; T Ueda
Journal:  Nat Biotechnol       Date:  2001-08       Impact factor: 54.908

2.  Programming peptidomimetic syntheses by translating genetic codes designed de novo.

Authors:  Anthony C Forster; Zhongping Tan; Madhavi N L Nalam; Hening Lin; Hui Qu; Virginia W Cornish; Stephen C Blacklow
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-16       Impact factor: 11.205

Review 3.  Expanding the genetic code.

Authors:  Lei Wang; Jianming Xie; Peter G Schultz
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

4.  A network of orthogonal ribosome x mRNA pairs.

Authors:  Oliver Rackham; Jason W Chin
Journal:  Nat Chem Biol       Date:  2005-07-17       Impact factor: 15.040

5.  Expanding the genetic code of Escherichia coli.

Authors:  L Wang; A Brock; B Herberich; P G Schultz
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

6.  Crystal structures of apo wild-type M. jannaschii tyrosyl-tRNA synthetase (TyrRS) and an engineered TyrRS specific for O-methyl-L-tyrosine.

Authors:  Yan Zhang; Lei Wang; Peter G Schultz; Ian A Wilson
Journal:  Protein Sci       Date:  2005-05       Impact factor: 6.725

7.  An efficient system for the evolution of aminoacyl-tRNA synthetase specificity.

Authors:  Stephen W Santoro; Lei Wang; Brad Herberich; David S King; Peter G Schultz
Journal:  Nat Biotechnol       Date:  2002-09-16       Impact factor: 54.908

8.  Addition of p-azido-L-phenylalanine to the genetic code of Escherichia coli.

Authors:  Jason W Chin; Stephen W Santoro; Andrew B Martin; David S King; Lei Wang; Peter G Schultz
Journal:  J Am Chem Soc       Date:  2002-08-07       Impact factor: 15.419

9.  An expanded genetic code with a functional quadruplet codon.

Authors:  J Christopher Anderson; Ning Wu; Stephen W Santoro; Vishva Lakshman; David S King; Peter G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-11       Impact factor: 11.205

10.  An expanded eukaryotic genetic code.

Authors:  Jason W Chin; T Ashton Cropp; J Christopher Anderson; Mridul Mukherji; Zhiwen Zhang; Peter G Schultz
Journal:  Science       Date:  2003-08-15       Impact factor: 47.728

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  25 in total

Review 1.  Pathways to Specialized Ribosomes: The Brussels Lecture.

Authors:  Jonathan D Dinman
Journal:  J Mol Biol       Date:  2016-01-04       Impact factor: 5.469

2.  A Highly Productive, One-Pot Cell-Free Protein Synthesis Platform Based on Genomically Recoded Escherichia coli.

Authors:  Benjamin J Des Soye; Vincent R Gerbasi; Paul M Thomas; Neil L Kelleher; Michael C Jewett
Journal:  Cell Chem Biol       Date:  2019-11-06       Impact factor: 8.116

3.  Translation system engineering in Escherichia coli enhances non-canonical amino acid incorporation into proteins.

Authors:  Rui Gan; Jessica G Perez; Erik D Carlson; Ioanna Ntai; Farren J Isaacs; Neil L Kelleher; Michael C Jewett
Journal:  Biotechnol Bioeng       Date:  2017-02-02       Impact factor: 4.530

Review 4.  Future prospects for noncanonical amino acids in biological therapeutics.

Authors:  Arlinda Rezhdo; Mariha Islam; Manjie Huang; James A Van Deventer
Journal:  Curr Opin Biotechnol       Date:  2019-04-08       Impact factor: 9.740

5.  A Robust and Quantitative Reporter System To Evaluate Noncanonical Amino Acid Incorporation in Yeast.

Authors:  Jessica T Stieglitz; Haixing P Kehoe; Ming Lei; James A Van Deventer
Journal:  ACS Synth Biol       Date:  2018-09-04       Impact factor: 5.110

6.  A platform for constructing, evaluating, and screening bioconjugates on the yeast surface.

Authors:  James A Van Deventer; Doris N Le; Jessie Zhao; Haixing P Kehoe; Ryan L Kelly
Journal:  Protein Eng Des Sel       Date:  2016-11-01       Impact factor: 1.650

7.  MS-READ: Quantitative measurement of amino acid incorporation.

Authors:  Kyle Mohler; Hans-Rudolf Aerni; Brandon Gassaway; Jiqiang Ling; Michael Ibba; Jesse Rinehart
Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-01-24       Impact factor: 3.770

Review 8.  The central role of tRNA in genetic code expansion.

Authors:  Noah M Reynolds; Oscar Vargas-Rodriguez; Dieter Söll; Ana Crnković
Journal:  Biochim Biophys Acta Gen Subj       Date:  2017-03-18       Impact factor: 3.770

9.  Broadening the Toolkit for Quantitatively Evaluating Noncanonical Amino Acid Incorporation in Yeast.

Authors:  Jessica T Stieglitz; Kelly A Potts; James A Van Deventer
Journal:  ACS Synth Biol       Date:  2021-11-03       Impact factor: 5.110

Review 10.  Repurposing ribosomes for synthetic biology.

Authors:  Yi Liu; Do Soon Kim; Michael C Jewett
Journal:  Curr Opin Chem Biol       Date:  2017-09-01       Impact factor: 8.822

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