Literature DB >> 28722545

tRNA engineering for manipulating genetic code.

Takayuki Katoh1,2, Yoshihiko Iwane1, Hiroaki Suga1,3.   

Abstract

In ribosomal translation, only 20 kinds of proteinogenic amino acids (pAAs), namely 19 l-amino acids and glycine, are exclusively incorporated into polypeptide chain. To overcome this limitation, various methods to introduce non-proteinogenic amino acids (npAAs) other than the 20 pAAs have been developed to date. However, the repertoire of amino acids that can be simultaneously introduced is still limited. Moreover, the efficiency of npAA incorporation is not always sufficient depending on their structures. Fidelity of translation is sometimes low due to misincorporation of competing pAAs and/or undesired translation termination. Here, we provide an overview of efforts to solve these issues, focusing on the engineering of tRNAs.

Entities:  

Keywords:  aminoacyl-tRNA synthetase; flexizyme; genetic code reprogramming; non-proteinogenic amino acid; peptide; ribosome; tRNA; translation

Mesh:

Substances:

Year:  2017        PMID: 28722545      PMCID: PMC6103704          DOI: 10.1080/15476286.2017.1343227

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  45 in total

1.  Amino acid backbone specificity of the Escherichia coli translation machinery.

Authors:  Zhongping Tan; Anthony C Forster; Stephen C Blacklow; Virginia W Cornish
Journal:  J Am Chem Soc       Date:  2004-10-13       Impact factor: 15.419

2.  Amino acid specificity in translation.

Authors:  Taraka Dale; Olke C Uhlenbeck
Journal:  Trends Biochem Sci       Date:  2005-11-02       Impact factor: 13.807

3.  A highly flexible tRNA acylation method for non-natural polypeptide synthesis.

Authors:  Hiroshi Murakami; Atsushi Ohta; Hiroshi Ashigai; Hiroaki Suga
Journal:  Nat Methods       Date:  2006-05       Impact factor: 28.547

4.  Synthesis of polyester by means of genetic code reprogramming.

Authors:  Atsushi Ohta; Hiroshi Murakami; Eri Higashimura; Hiroaki Suga
Journal:  Chem Biol       Date:  2007-12

5.  Extensive reprogramming of the genetic code for genetically encoded synthesis of highly N-alkylated polycyclic peptidomimetics.

Authors:  Takashi Kawakami; Takahiro Ishizawa; Hiroshi Murakami
Journal:  J Am Chem Soc       Date:  2013-08-08       Impact factor: 15.419

6.  Expanding the genetic code of Escherichia coli.

Authors:  L Wang; A Brock; B Herberich; P G Schultz
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

7.  Expanding the genetic code of Escherichia coli with phosphoserine.

Authors:  Hee-Sung Park; Michael J Hohn; Takuya Umehara; Li-Tao Guo; Edith M Osborne; Jack Benner; Christopher J Noren; Jesse Rinehart; Dieter Söll
Journal:  Science       Date:  2011-08-26       Impact factor: 47.728

8.  Enhanced D-amino acid incorporation into protein by modified ribosomes.

Authors:  Larisa M Dedkova; Nour Eddine Fahmi; Serguei Y Golovine; Sidney M Hecht
Journal:  J Am Chem Soc       Date:  2003-06-04       Impact factor: 15.419

9.  RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites.

Authors:  David B F Johnson; Jianfeng Xu; Zhouxin Shen; Jeffrey K Takimoto; Matthew D Schultz; Robert J Schmitz; Zheng Xiang; Joseph R Ecker; Steven P Briggs; Lei Wang
Journal:  Nat Chem Biol       Date:  2011-09-18       Impact factor: 15.040

10.  The use of thymidine analogs to improve the replication of an extra DNA base pair: a synthetic biological system.

Authors:  A Michael Sismour; Steven A Benner
Journal:  Nucleic Acids Res       Date:  2005-09-28       Impact factor: 16.971

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  5 in total

1.  Transfer RNA function and evolution.

Authors:  Patrick O'Donoghue; Jiqiang Ling; Dieter Söll
Journal:  RNA Biol       Date:  2018       Impact factor: 4.652

Review 2.  Codon-Reduced Protein Synthesis With Manipulating tRNA Components in Cell-Free System.

Authors:  Jiaojiao Li; Mengtong Tang; Hao Qi
Journal:  Front Bioeng Biotechnol       Date:  2022-05-13

3.  Uniform affinity-tuning of N-methyl-aminoacyl-tRNAs to EF-Tu enhances their multiple incorporation.

Authors:  Yoshihiko Iwane; Hiroyuki Kimura; Takayuki Katoh; Hiroaki Suga
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

Review 4.  Intelligent host engineering for metabolic flux optimisation in biotechnology.

Authors:  Lachlan J Munro; Douglas B Kell
Journal:  Biochem J       Date:  2021-10-29       Impact factor: 3.857

5.  Repurposing tRNAs for nonsense suppression.

Authors:  Suki Albers; Bertrand Beckert; Marco C Matthies; Chandra Sekhar Mandava; Raphael Schuster; Carolin Seuring; Maria Riedner; Suparna Sanyal; Andrew E Torda; Daniel N Wilson; Zoya Ignatova
Journal:  Nat Commun       Date:  2021-06-22       Impact factor: 14.919

  5 in total

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