Literature DB >> 26914285

Dual Genetic Encoding of Acetyl-lysine and Non-deacetylatable Thioacetyl-lysine Mediated by Flexizyme.

Hai Xiong1, Noah M Reynolds1, Chenguang Fan1, Markus Englert1, Denton Hoyer2, Scott J Miller3, Dieter Söll4,5.   

Abstract

Acetylation of lysine residues is an important post-translational protein modification. Lysine acetylation in histones and its crosstalk with other post-translational modifications in histone and non-histone proteins are crucial to DNA replication, DNA repair, and transcriptional regulation. We incorporated acetyl-lysine (AcK) and the non-hydrolyzable thioacetyl-lysine (ThioAcK) into full-length proteins in vitro, mediated by flexizyme. ThioAcK and AcK were site-specifically incorporated at different lysine positions into human histone H3, either individually or in pairs. We demonstrate that the thioacetyl group in histone H3 could not be removed by the histone deacetylase sirtuin type 1. This method provides a powerful tool to study protein acetylation and its role in crosstalk between post-translational modifications.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  flexizyme; histone; lysine acetylation; post-translational modifications; thioacetyl-lysine

Mesh:

Substances:

Year:  2016        PMID: 26914285      PMCID: PMC4789153          DOI: 10.1002/anie.201511750

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  32 in total

1.  A tRNA aminoacylation system for non-natural amino acids based on a programmable ribozyme.

Authors:  Yoshitaka Bessho; David R W Hodgson; Hiroaki Suga
Journal:  Nat Biotechnol       Date:  2002-07       Impact factor: 54.908

2.  A highly flexible tRNA acylation method for non-natural polypeptide synthesis.

Authors:  Hiroshi Murakami; Atsushi Ohta; Hiroshi Ashigai; Hiroaki Suga
Journal:  Nat Methods       Date:  2006-05       Impact factor: 28.547

3.  Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes.

Authors:  Toshiaki Tsubota; Christopher E Berndsen; Judith A Erkmann; Corey L Smith; Lanhao Yang; Michael A Freitas; John M Denu; Paul D Kaufman
Journal:  Mol Cell       Date:  2007-02-22       Impact factor: 17.970

Review 4.  Histone acetyltransferase complexes: one size doesn't fit all.

Authors:  Kenneth K Lee; Jerry L Workman
Journal:  Nat Rev Mol Cell Biol       Date:  2007-04       Impact factor: 94.444

5.  "Chemical aminoacylation" of tRNA's.

Authors:  S M Hecht; B L Alford; Y Kuroda; S Kitano
Journal:  J Biol Chem       Date:  1978-07-10       Impact factor: 5.157

6.  Expanding the genetic code of Escherichia coli.

Authors:  L Wang; A Brock; B Herberich; P G Schultz
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

7.  An orthogonal ribosome-tRNA pair via engineering of the peptidyl transferase center.

Authors:  Naohiro Terasaka; Gosuke Hayashi; Takayuki Katoh; Hiroaki Suga
Journal:  Nat Chem Biol       Date:  2014-06-08       Impact factor: 15.040

8.  Structure and ligand of a histone acetyltransferase bromodomain.

Authors:  C Dhalluin; J E Carlson; L Zeng; C He; A K Aggarwal; M M Zhou
Journal:  Nature       Date:  1999-06-03       Impact factor: 49.962

9.  Nepsilon-thioacetyl-lysine: a multi-facet functional probe for enzymatic protein lysine Nepsilon-deacetylation.

Authors:  David G Fatkins; Andrew D Monnot; Weiping Zheng
Journal:  Bioorg Med Chem Lett       Date:  2006-05-12       Impact factor: 2.823

10.  hSIR2(SIRT1) functions as an NAD-dependent p53 deacetylase.

Authors:  H Vaziri; S K Dessain; E Ng Eaton; S I Imai; R A Frye; T K Pandita; L Guarente; R A Weinberg
Journal:  Cell       Date:  2001-10-19       Impact factor: 41.582

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  5 in total

1.  Engineered Aminoacyl-tRNA Synthetases with Improved Selectivity toward Noncanonical Amino Acids.

Authors:  Hui Si Kwok; Oscar Vargas-Rodriguez; Sergey V Melnikov; Dieter Söll
Journal:  ACS Chem Biol       Date:  2019-04-09       Impact factor: 5.100

2.  Genetically Incorporating Two Distinct Post-translational Modifications into One Protein Simultaneously.

Authors:  Sumana Venkat; Jourdan Sturges; Alleigh Stahman; Caroline Gregory; Qinglei Gan; Chenguang Fan
Journal:  ACS Synth Biol       Date:  2018-01-17       Impact factor: 5.110

3.  Side-chain thioamides as fluorescence quenching probes.

Authors:  D Miklos Robkis; Eileen M Hoang; Pengse Po; Carol J Deutsch; E James Petersson
Journal:  Biopolymers       Date:  2020-06-17       Impact factor: 2.505

4.  Genetically encoding thioacetyl-lysine as a non-deacetylatable analog of lysine acetylation in Escherichia coli.

Authors:  Sumana Venkat; Dharma Theja Nannapaneni; Caroline Gregory; Qinglei Gan; Matt McIntosh; Chenguang Fan
Journal:  FEBS Open Bio       Date:  2017-10-16       Impact factor: 2.693

Review 5.  Recent Development of Genetic Code Expansion for Posttranslational Modification Studies.

Authors:  Hao Chen; Sumana Venkat; Paige McGuire; Qinglei Gan; Chenguang Fan
Journal:  Molecules       Date:  2018-07-08       Impact factor: 4.411

  5 in total

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