Literature DB >> 24338448

High-resolution paramagnetically enhanced solid-state NMR spectroscopy of membrane proteins at fast magic angle spinning.

Meaghan E Ward1, Shenlin Wang, Sridevi Krishnamurthy, Howard Hutchins, Michael Fey, Leonid S Brown, Vladimir Ladizhansky.   

Abstract

Magic angle spinning nuclear magnetic resonance (MAS NMR) is well suited for the study of membrane proteins in membrane mimetic and native membrane environments. These experiments often suffer from low sensitivity, due in part to the long recycle delays required for magnetization and probe recovery, as well as detection of low gamma nuclei. In ultrafast MAS experiments sensitivity can be enhanced through the use of low power sequences combined with paramagnetically enhanced relaxation times to reduce recycle delays, as well as proton detected experiments. In this work we investigate the sensitivity of (13)C and (1)H detected experiments applied to 27 kDa membrane proteins reconstituted in lipids and packed in small 1.3 mm MAS NMR rotors. We demonstrate that spin diffusion is sufficient to uniformly distribute paramagnetic relaxation enhancement provided by either covalently bound or dissolved CuEDTA over 7TM alpha helical membrane proteins. Using paramagnetic enhancement and low power decoupling in carbon detected experiments we can recycle experiments ~13 times faster than under traditional conditions. However, due to the small sample volume the overall sensitivity per unit time is still lower than that seen in the 3.2 mm probe. Proton detected experiments, however, showed increased efficiency and it was found that the 1.3 mm probe could achieve sensitivity comparable to that of the 3.2 mm in a given amount of time. This is an attractive prospect for samples of limited quantity, as this allows for a reduction in the amount of protein that needs to be produced without the necessity for increased experimental time.

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Year:  2013        PMID: 24338448     DOI: 10.1007/s10858-013-9802-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  45 in total

1.  Low-power high-resolution solid-state NMR of peptides and proteins.

Authors:  Matthias Ernst; Marcel A Meier; Tiit Tuherm; Ago Samoson; Beat H Meier
Journal:  J Am Chem Soc       Date:  2004-04-21       Impact factor: 15.419

2.  Measurement of site-specific 13C spin-lattice relaxation in a crystalline protein.

Authors:  Józef R Lewandowski; Julien Sein; Hans Jürgen Sass; Stephan Grzesiek; Martin Blackledge; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

3.  Rapid acquisition of multidimensional solid-state NMR spectra of proteins facilitated by covalently bound paramagnetic tags.

Authors:  Philippe S Nadaud; Jonathan J Helmus; Ishita Sengupta; Christopher P Jaroniec
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

Review 4.  Structure elucidation of membrane-associated peptides and proteins in oriented bilayers by solid-state NMR spectroscopy.

Authors:  Akira Naito
Journal:  Solid State Nucl Magn Reson       Date:  2009-07-08       Impact factor: 2.293

5.  Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals.

Authors:  Shakeel Ahmad Shahid; Benjamin Bardiaux; W Trent Franks; Ludwig Krabben; Michael Habeck; Barth-Jan van Rossum; Dirk Linke
Journal:  Nat Methods       Date:  2012-11-11       Impact factor: 28.547

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Proton-detected solid-state NMR reveals intramembrane polar networks in a seven-helical transmembrane protein proteorhodopsin.

Authors:  Meaghan E Ward; Lichi Shi; Evelyn Lake; Sridevi Krishnamurthy; Howard Hutchins; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

8.  Efficient low-power heteronuclear decoupling in 13C high-resolution solid-state NMR under fast magic angle spinning.

Authors:  Mrignayani Kotecha; Nalinda P Wickramasinghe; Yoshitaka Ishii
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

9.  Cytoplasmic shuttling of protons in anabaena sensory rhodopsin: implications for signaling mechanism.

Authors:  Lichi Shi; Sa Ryong Yoon; Arandi G Bezerra; Kwang-Hwan Jung; Leonid S Brown
Journal:  J Mol Biol       Date:  2006-03-02       Impact factor: 5.469

10.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

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  10 in total

1.  Sensitivity and resolution of proton detected spectra of a deuterated protein at 40 and 60 kHz magic-angle-spinning.

Authors:  Andrew J Nieuwkoop; W Trent Franks; Kristina Rehbein; Anne Diehl; Ümit Akbey; Frank Engelke; Lyndon Emsley; Guido Pintacuda; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2015-02-08       Impact factor: 2.835

2.  Application of paramagnetic relaxation enhancements to accelerate the acquisition of 2D and 3D solid-state NMR spectra of oriented membrane proteins.

Authors:  Songlin Wang; T Gopinath; Gianluigi Veglia
Journal:  Methods       Date:  2017-12-22       Impact factor: 3.608

3.  Progress in proton-detected solid-state NMR (SSNMR): Super-fast 2D SSNMR collection for nano-mole-scale proteins.

Authors:  Yoshitaka Ishii; Ayesha Wickramasinghe; Isamu Matsuda; Yuki Endo; Yuji Ishii; Yusuke Nishiyama; Takahiro Nemoto; Takayuki Kamihara
Journal:  J Magn Reson       Date:  2017-11-28       Impact factor: 2.229

4.  Paramagnetic relaxation enhancement of membrane proteins by incorporation of the metal-chelating unnatural amino acid 2-amino-3-(8-hydroxyquinolin-3-yl)propanoic acid (HQA).

Authors:  Sang Ho Park; Vivian S Wang; Jasmina Radoicic; Anna A De Angelis; Sabrina Berkamp; Stanley J Opella
Journal:  J Biomol NMR       Date:  2014-11-28       Impact factor: 2.835

5.  ¹³C- and ¹H-detection under fast MAS for the study of poorly available proteins: application to sub-milligram quantities of a 7 trans-membrane protein.

Authors:  Hugh R W Dannatt; Garrick F Taylor; Krisztina Varga; Victoria A Higman; Marc-Philipp Pfeil; Lubica Asilmovska; Peter J Judge; Anthony Watts
Journal:  J Biomol NMR       Date:  2015-02-21       Impact factor: 2.835

6.  Structural studies of proteins by paramagnetic solid-state NMR spectroscopy.

Authors:  Christopher P Jaroniec
Journal:  J Magn Reson       Date:  2015-04       Impact factor: 2.229

7.  Gd3+-chelated lipid accelerates solid-state NMR spectroscopy of seven-transmembrane proteins.

Authors:  Chang Liu; Jing Liu; Xiaojun Xu; ShengQi Xiang; Shenlin Wang
Journal:  J Biomol NMR       Date:  2017-05-30       Impact factor: 2.835

8.  Characterization of Protein-Protein Interfaces in Large Complexes by Solid-State NMR Solvent Paramagnetic Relaxation Enhancements.

Authors:  Carl Öster; Simone Kosol; Christoph Hartlmüller; Jonathan M Lamley; Dinu Iuga; Andres Oss; Mai-Liis Org; Kalju Vanatalu; Ago Samoson; Tobias Madl; Józef R Lewandowski
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

9.  Solid-State NMR Provides Evidence for Small-Amplitude Slow Domain Motions in a Multispanning Transmembrane α-Helical Protein.

Authors:  Daryl Good; Charlie Pham; Jacob Jagas; Józef R Lewandowski; Vladimir Ladizhansky
Journal:  J Am Chem Soc       Date:  2017-06-30       Impact factor: 15.419

10.  Quantifying Microsecond Exchange in Large Protein Complexes with Accelerated Relaxation Dispersion Experiments in the Solid State.

Authors:  Carl Öster; Simone Kosol; Józef R Lewandowski
Journal:  Sci Rep       Date:  2019-07-31       Impact factor: 4.379

  10 in total

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