Literature DB >> 23142870

Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals.

Shakeel Ahmad Shahid1, Benjamin Bardiaux, W Trent Franks, Ludwig Krabben, Michael Habeck, Barth-Jan van Rossum, Dirk Linke.   

Abstract

Membrane proteins are largely underrepresented among available atomic-resolution structures. The use of detergents in protein purification procedures hinders the formation of well-ordered crystals for X-ray crystallography and leads to slower molecular tumbling, impeding the application of solution-state NMR. Solid-state magic-angle spinning NMR spectroscopy is an emerging method for membrane-protein structural biology that can overcome these technical problems. Here we present the solid-state NMR structure of the transmembrane domain of the Yersinia enterocolitica adhesin A (YadA). The sample was derived from crystallization trials that yielded only poorly diffracting microcrystals. We solved the structure using a single, uniformly (13)C- and (15)N-labeled sample. In addition, solid-state NMR allowed us to acquire information on the flexibility and mobility of parts of the structure, which, in combination with evolutionary conservation information, presents new insights into the autotransport mechanism of YadA.

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Year:  2012        PMID: 23142870     DOI: 10.1038/nmeth.2248

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  44 in total

1.  Efficient modeling of symmetric protein aggregates from NMR data.

Authors:  Benjamin Bardiaux; Barth-Jan van Rossum; Michael Nilges; Hartmut Oschkinat
Journal:  Angew Chem Int Ed Engl       Date:  2012-05-31       Impact factor: 15.336

Review 2.  The structure of alpha-helical coiled coils.

Authors:  Andrei N Lupas; Markus Gruber
Journal:  Adv Protein Chem       Date:  2005

3.  Inferential structure determination.

Authors:  Wolfgang Rieping; Michael Habeck; Michael Nilges
Journal:  Science       Date:  2005-07-08       Impact factor: 47.728

4.  Incorporation of a polypeptide segment into the beta-domain pore during the assembly of a bacterial autotransporter.

Authors:  Raffaele Ieva; Kristen M Skillman; Harris D Bernstein
Journal:  Mol Microbiol       Date:  2007-11-27       Impact factor: 3.501

5.  High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.

Authors:  R R Ketchem; W Hu; T A Cross
Journal:  Science       Date:  1993-09-10       Impact factor: 47.728

6.  A transition from strong right-handed to canonical left-handed supercoiling in a conserved coiled-coil segment of trimeric autotransporter adhesins.

Authors:  Birte Hernandez Alvarez; Markus Gruber; Astrid Ursinus; Stanislaw Dunin-Horkawicz; Andrei N Lupas; Kornelius Zeth
Journal:  J Struct Biol       Date:  2010-02-21       Impact factor: 2.867

7.  The structure of E. coli IgG-binding protein D suggests a general model for bending and binding in trimeric autotransporter adhesins.

Authors:  Jack C Leo; Andrzej Lyskowski; Katarina Hattula; Marcus D Hartmann; Heinz Schwarz; Sarah J Butcher; Dirk Linke; Andrei N Lupas; Adrian Goldman
Journal:  Structure       Date:  2011-07-13       Impact factor: 5.006

8.  Purification of the YadA membrane anchor for secondary structure analysis and crystallization.

Authors:  Petra Wollmann; Kornelius Zeth; Andrei N Lupas; Dirk Linke
Journal:  Int J Biol Macromol       Date:  2006-01-06       Impact factor: 6.953

9.  Solid-state NMR and SAXS studies provide a structural basis for the activation of alphaB-crystallin oligomers.

Authors:  Stefan Jehle; Ponni Rajagopal; Benjamin Bardiaux; Stefan Markovic; Ronald Kühne; Joseph R Stout; Victoria A Higman; Rachel E Klevit; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  Nat Struct Mol Biol       Date:  2010-08-29       Impact factor: 15.369

10.  Domain annotation of trimeric autotransporter adhesins--daTAA.

Authors:  Pawel Szczesny; Andrei Lupas
Journal:  Bioinformatics       Date:  2008-04-08       Impact factor: 6.937

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  52 in total

1.  High-resolution paramagnetically enhanced solid-state NMR spectroscopy of membrane proteins at fast magic angle spinning.

Authors:  Meaghan E Ward; Shenlin Wang; Sridevi Krishnamurthy; Howard Hutchins; Michael Fey; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Biomol NMR       Date:  2013-12-13       Impact factor: 2.835

2.  Purification, crystallization and preliminary X-ray crystallographic analysis of the transport unit of the monomeric autotransporter AIDA-I from Escherichia coli.

Authors:  Iris Gawarzewski; Britta Tschapek; Astrid Hoeppner; Joachim Jose; Sander H J Smits; Lutz Schmitt
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-09-28

3.  Proton-detected 2D radio frequency driven recoupling solid-state NMR studies on micelle-associated cytochrome-b(5).

Authors:  Manoj Kumar Pandey; Subramanian Vivekanandan; Kazutoshi Yamamoto; Sangchoul Im; Lucy Waskell; Ayyalusamy Ramamoorthy
Journal:  J Magn Reson       Date:  2014-03-01       Impact factor: 2.229

4.  NMR as a tool to investigate the structure, dynamics and function of membrane proteins.

Authors:  Binyong Liang; Lukas K Tamm
Journal:  Nat Struct Mol Biol       Date:  2016-06-07       Impact factor: 15.369

Review 5.  Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.

Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

6.  The inverse autotransporter intimin exports its passenger domain via a hairpin intermediate.

Authors:  Philipp Oberhettinger; Jack C Leo; Dirk Linke; Ingo B Autenrieth; Monika S Schütz
Journal:  J Biol Chem       Date:  2014-12-08       Impact factor: 5.157

7.  Insight into the conformational stability of membrane-embedded BamA using a combined solution and solid-state NMR approach.

Authors:  Tessa Sinnige; Klaartje Houben; Iva Pritisanac; Marie Renault; Rolf Boelens; Marc Baldus
Journal:  J Biomol NMR       Date:  2015-01-08       Impact factor: 2.835

8.  Solid-state NMR spectroscopy structure determination of a lipid-embedded heptahelical membrane protein.

Authors:  Shenlin Wang; Rachel A Munro; Lichi Shi; Izuru Kawamura; Takashi Okitsu; Akimori Wada; So-Young Kim; Kwang-Hwan Jung; Leonid S Brown; Vladimir Ladizhansky
Journal:  Nat Methods       Date:  2013-09-08       Impact factor: 28.547

9.  Evolutionary conservation in biogenesis of β-barrel proteins allows mitochondria to assemble a functional bacterial trimeric autotransporter protein.

Authors:  Thomas Ulrich; Philipp Oberhettinger; Monika Schütz; Katharina Holzer; Anne S Ramms; Dirk Linke; Ingo B Autenrieth; Doron Rapaport
Journal:  J Biol Chem       Date:  2014-09-04       Impact factor: 5.157

10.  Gd3+-chelated lipid accelerates solid-state NMR spectroscopy of seven-transmembrane proteins.

Authors:  Chang Liu; Jing Liu; Xiaojun Xu; ShengQi Xiang; Shenlin Wang
Journal:  J Biomol NMR       Date:  2017-05-30       Impact factor: 2.835

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