Literature DB >> 25663049

Sensitivity and resolution of proton detected spectra of a deuterated protein at 40 and 60 kHz magic-angle-spinning.

Andrew J Nieuwkoop1, W Trent Franks, Kristina Rehbein, Anne Diehl, Ümit Akbey, Frank Engelke, Lyndon Emsley, Guido Pintacuda, Hartmut Oschkinat.   

Abstract

The use of small rotors capable of very fast magic-angle spinning (MAS) in conjunction with proton dilution by perdeuteration and partial reprotonation at exchangeable sites has enabled the acquisition of resolved, proton detected, solid-state NMR spectra on samples of biological macromolecules. The ability to detect the high-gamma protons, instead of carbons or nitrogens, increases sensitivity. In order to achieve sufficient resolution of the amide proton signals, rotors must be spun at the maximum rate possible given their size and the proton back-exchange percentage tuned. Here we investigate the optimal proton back-exchange ratio for triply labeled SH3 at 40 kHz MAS. We find that spectra acquired on 60 % back-exchanged samples in 1.9 mm rotors have similar resolution at 40 kHz MAS as spectra of 100 % back-exchanged samples in 1.3 mm rotors spinning at 60 kHz MAS, and for (H)NH 2D and (H)CNH 3D spectra, show 10-20 % higher sensitivity. For 100 % back-exchanged samples, the sensitivity in 1.9 mm rotors is superior by a factor of 1.9 in (H)NH and 1.8 in (H)CNH spectra but at lower resolution. For (H)C(C)NH experiments with a carbon-carbon mixing period, this sensitivity gain is lost due to shorter relaxation times and less efficient transfer steps. We present a detailed study on the sensitivity of these types of experiments for both types of rotors, which should enable experimentalists to make an informed decision about which type of rotor is best for specific applications.

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Year:  2015        PMID: 25663049     DOI: 10.1007/s10858-015-9904-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  37 in total

1.  Assignment of dynamic regions in biological solids enabled by spin-state selective NMR experiments.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

2.  Measurement of site-specific 13C spin-lattice relaxation in a crystalline protein.

Authors:  Józef R Lewandowski; Julien Sein; Hans Jürgen Sass; Stephan Grzesiek; Martin Blackledge; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

3.  Rapid acquisition of multidimensional solid-state NMR spectra of proteins facilitated by covalently bound paramagnetic tags.

Authors:  Philippe S Nadaud; Jonathan J Helmus; Ishita Sengupta; Christopher P Jaroniec
Journal:  J Am Chem Soc       Date:  2010-07-21       Impact factor: 15.419

4.  Solid-state protein-structure determination with proton-detected triple-resonance 3D magic-angle-spinning NMR spectroscopy.

Authors:  Donghua H Zhou; John J Shea; Andrew J Nieuwkoop; W Trent Franks; Benjamin J Wylie; Charles Mullen; Dennis Sandoz; Chad M Rienstra
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Optimum levels of exchangeable protons in perdeuterated proteins for proton detection in MAS solid-state NMR spectroscopy.

Authors:  Umit Akbey; Sascha Lange; W Trent Franks; Rasmus Linser; Kristina Rehbein; Anne Diehl; Barth-Jan van Rossum; Bernd Reif; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-08-22       Impact factor: 2.835

6.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

7.  A proton-detected 4D solid-state NMR experiment for protein structure determination.

Authors:  Matthias Huber; Sebastian Hiller; Paul Schanda; Matthias Ernst; Anja Böckmann; René Verel; Beat H Meier
Journal:  Chemphyschem       Date:  2011-02-15       Impact factor: 3.102

8.  De novo 3D structure determination from sub-milligram protein samples by solid-state 100 kHz MAS NMR spectroscopy.

Authors:  Vipin Agarwal; Susanne Penzel; Kathrin Szekely; Riccardo Cadalbert; Emilie Testori; Andres Oss; Jaan Past; Ago Samoson; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2014-09-15       Impact factor: 15.336

9.  Proton-detected MAS NMR experiments based on dipolar transfers for backbone assignment of highly deuterated proteins.

Authors:  Veniamin Chevelkov; Birgit Habenstein; Antoine Loquet; Karin Giller; Stefan Becker; Adam Lange
Journal:  J Magn Reson       Date:  2014-03-04       Impact factor: 2.229

10.  Proton-detected solid-state NMR reveals intramembrane polar networks in a seven-helical transmembrane protein proteorhodopsin.

Authors:  Meaghan E Ward; Lichi Shi; Evelyn Lake; Sridevi Krishnamurthy; Howard Hutchins; Leonid S Brown; Vladimir Ladizhansky
Journal:  J Am Chem Soc       Date:  2011-10-07       Impact factor: 15.419

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  12 in total

1.  Protein residue linking in a single spectrum for magic-angle spinning NMR assignment.

Authors:  Loren B Andreas; Jan Stanek; Tanguy Le Marchand; Andrea Bertarello; Diane Cala-De Paepe; Daniela Lalli; Magdaléna Krejčíková; Camille Doyen; Carl Öster; Benno Knott; Sebastian Wegner; Frank Engelke; Isabella C Felli; Roberta Pierattelli; Nicholas E Dixon; Lyndon Emsley; Torsten Herrmann; Guido Pintacuda
Journal:  J Biomol NMR       Date:  2015-06-16       Impact factor: 2.835

2.  MAS dependent sensitivity of different isotopomers in selectively methyl protonated protein samples in solid state NMR.

Authors:  Kai Xue; Riddhiman Sarkar; Zdenek Tosner; Daniela Lalli; Carina Motz; Benita Koch; Guido Pintacuda; Bernd Reif
Journal:  J Biomol NMR       Date:  2019-09-12       Impact factor: 2.835

3.  Interaction of Monomeric Interleukin-8 with CXCR1 Mapped by Proton-Detected Fast MAS Solid-State NMR.

Authors:  Sang Ho Park; Sabrina Berkamp; Jasmina Radoicic; Anna A De Angelis; Stanley J Opella
Journal:  Biophys J       Date:  2017-12-19       Impact factor: 4.033

4.  Design and construction of a quadruple-resonance MAS NMR probe for investigation of extensively deuterated biomolecules.

Authors:  Kelsey A Collier; Suvrajit Sengupta; Catalina A Espinosa; John E Kelly; Jessica I Kelz; Rachel W Martin
Journal:  J Magn Reson       Date:  2017-10-12       Impact factor: 2.229

Review 5.  Advances in instrumentation and methodology for solid-state NMR of biological assemblies.

Authors:  Rachel W Martin; John E Kelly; Jessica I Kelz
Journal:  J Struct Biol       Date:  2018-09-08       Impact factor: 2.867

6.  Structure of fully protonated proteins by proton-detected magic-angle spinning NMR.

Authors:  Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Daniela Lalli; Andrea Bertarello; Tanguy Le Marchand; Diane Cala-De Paepe; Svetlana Kotelovica; Inara Akopjana; Benno Knott; Sebastian Wegner; Frank Engelke; Anne Lesage; Lyndon Emsley; Kaspars Tars; Torsten Herrmann; Guido Pintacuda
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-03       Impact factor: 11.205

7.  Rapid access to RNA resonances by proton-detected solid-state NMR at >100 kHz MAS.

Authors:  Alexander Marchanka; Jan Stanek; Guido Pintacuda; Teresa Carlomagno
Journal:  Chem Commun (Camb)       Date:  2018-07-05       Impact factor: 6.222

8.  New applications of solid-state NMR in structural biology.

Authors:  Patrick C A van der Wel
Journal:  Emerg Top Life Sci       Date:  2018-02-23

9.  Proton Detected Solid-State NMR of Membrane Proteins at 28 Tesla (1.2 GHz) and 100 kHz Magic-Angle Spinning.

Authors:  Evgeny Nimerovsky; Kumar Tekwani Movellan; Xizhou Cecily Zhang; Marcel C Forster; Eszter Najbauer; Kai Xue; Rıza Dervişoǧlu; Karin Giller; Christian Griesinger; Stefan Becker; Loren B Andreas
Journal:  Biomolecules       Date:  2021-05-18

10.  Atomic-resolution structure of cytoskeletal bactofilin by solid-state NMR.

Authors:  Chaowei Shi; Pascal Fricke; Lin Lin; Veniamin Chevelkov; Melanie Wegstroth; Karin Giller; Stefan Becker; Martin Thanbichler; Adam Lange
Journal:  Sci Adv       Date:  2015-12-04       Impact factor: 14.136

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