Literature DB >> 24200810

Molecular architecture of a eukaryotic translational initiation complex.

Israel S Fernández1, Xiao-Chen Bai1, Tanweer Hussain1, Ann C Kelley1, Jon R Lorsch2, V Ramakrishnan1, Sjors H W Scheres1.   

Abstract

The last step in eukaryotic translational initiation involves the joining of the large and small subunits of the ribosome, with initiator transfer RNA (Met-tRNA(i)(Met)) positioned over the start codon of messenger RNA in the P site. This step is catalyzed by initiation factor eIF5B. We used recent advances in cryo-electron microscopy (cryo-EM) to determine a structure of the eIF5B initiation complex to 6.6 angstrom resolution from <3% of the population, comprising just 5143 particles. The structure reveals conformational changes in eIF5B, initiator tRNA, and the ribosome that provide insights into the role of eIF5B in translational initiation. The relatively high resolution obtained from such a small fraction of a heterogeneous sample suggests a general approach for characterizing the structure of other dynamic or transient biological complexes.

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Year:  2013        PMID: 24200810      PMCID: PMC3836175          DOI: 10.1126/science.1240585

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  39 in total

1.  GTP-dependent recognition of the methionine moiety on initiator tRNA by translation factor eIF2.

Authors:  Lee D Kapp; Jon R Lorsch
Journal:  J Mol Biol       Date:  2004-01-23       Impact factor: 5.469

2.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

3.  Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Authors:  Jean-Paul Armache; Alexander Jarasch; Andreas M Anger; Elizabeth Villa; Thomas Becker; Shashi Bhushan; Fabrice Jossinet; Michael Habeck; Gülcin Dindar; Sibylle Franckenberg; Viter Marquez; Thorsten Mielke; Michael Thomm; Otto Berninghausen; Birgitta Beatrix; Johannes Söding; Eric Westhof; Daniel N Wilson; Roland Beckmann
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-27       Impact factor: 11.205

4.  EMAN2: an extensible image processing suite for electron microscopy.

Authors:  Guang Tang; Liwei Peng; Philip R Baldwin; Deepinder S Mann; Wen Jiang; Ian Rees; Steven J Ludtke
Journal:  J Struct Biol       Date:  2006-06-08       Impact factor: 2.867

5.  The cryo-EM structure of a translation initiation complex from Escherichia coli.

Authors:  Gregory S Allen; Andrey Zavialov; Richard Gursky; Måns Ehrenberg; Joachim Frank
Journal:  Cell       Date:  2005-06-03       Impact factor: 41.582

6.  Reconstitution of yeast translation initiation.

Authors:  Michael G Acker; Sarah E Kolitz; Sarah F Mitchell; Jagpreet S Nanda; Jon R Lorsch
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

7.  Kinetic analysis of late steps of eukaryotic translation initiation.

Authors:  Michael G Acker; Byung-Sik Shin; Jagpreet S Nanda; Adesh K Saini; Thomas E Dever; Jon R Lorsch
Journal:  J Mol Biol       Date:  2008-10-19       Impact factor: 5.469

8.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

9.  Prevention of overfitting in cryo-EM structure determination.

Authors:  Sjors H W Scheres; Shaoxia Chen
Journal:  Nat Methods       Date:  2012-09       Impact factor: 28.547

10.  Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles.

Authors:  Xiao-Chen Bai; Israel S Fernandez; Greg McMullan; Sjors H W Scheres
Journal:  Elife       Date:  2013-02-19       Impact factor: 8.140

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  69 in total

1.  Initiation factor 2 stabilizes the ribosome in a semirotated conformation.

Authors:  Clarence Ling; Dmitri N Ermolenko
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-14       Impact factor: 11.205

Review 2.  Eukaryote-specific extensions in ribosomal proteins of the small subunit: Structure and function.

Authors:  Arnab Ghosh; Anton A Komar
Journal:  Translation (Austin)       Date:  2015-02-05

3.  eIF5B employs a novel domain release mechanism to catalyze ribosomal subunit joining.

Authors:  Bernhard Kuhle; Ralf Ficner
Journal:  EMBO J       Date:  2014-03-31       Impact factor: 11.598

4.  Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA.

Authors:  Hiroshi Yamamoto; Anett Unbehaun; Justus Loerke; Elmar Behrmann; Marianne Collier; Jörg Bürger; Thorsten Mielke; Christian M T Spahn
Journal:  Nat Struct Mol Biol       Date:  2014-07-27       Impact factor: 15.369

Review 5.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

6.  Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation.

Authors:  André Heuer; Milan Gerovac; Christian Schmidt; Simon Trowitzsch; Anne Preis; Peter Kötter; Otto Berninghausen; Thomas Becker; Roland Beckmann; Robert Tampé
Journal:  Nat Struct Mol Biol       Date:  2017-04-03       Impact factor: 15.369

Review 7.  Eukaryotic aspects of translation initiation brought into focus.

Authors:  Christopher H S Aylett; Nenad Ban
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

Review 8.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

Review 9.  New Insights into Ribosome Structure and Function.

Authors:  Amy Jobe; Zheng Liu; Cristina Gutierrez-Vargas; Joachim Frank
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-01-02       Impact factor: 10.005

Review 10.  Single-Particle Cryo-EM at Crystallographic Resolution.

Authors:  Yifan Cheng
Journal:  Cell       Date:  2015-04-23       Impact factor: 41.582

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