Literature DB >> 20980660

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Jean-Paul Armache1, Alexander Jarasch, Andreas M Anger, Elizabeth Villa, Thomas Becker, Shashi Bhushan, Fabrice Jossinet, Michael Habeck, Gülcin Dindar, Sibylle Franckenberg, Viter Marquez, Thorsten Mielke, Michael Thomm, Otto Berninghausen, Birgitta Beatrix, Johannes Söding, Eric Westhof, Daniel N Wilson, Roland Beckmann.   

Abstract

Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-Å resolution. This map, together with a 6.1-Å map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model ∼98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES-ES and r-protein-ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.

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Year:  2010        PMID: 20980660      PMCID: PMC2993355          DOI: 10.1073/pnas.1009999107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  57 in total

1.  Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution.

Authors:  W M Clemons; J L May; B T Wimberly; J P McCutcheon; M S Capel; V Ramakrishnan
Journal:  Nature       Date:  1999-08-26       Impact factor: 49.962

2.  Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit.

Authors:  N Ban; P Nissen; J Hansen; M Capel; P B Moore; T A Steitz
Journal:  Nature       Date:  1999-08-26       Impact factor: 49.962

3.  Structures of the bacterial ribosome at 3.5 A resolution.

Authors:  Barbara S Schuwirth; Maria A Borovinskaya; Cathy W Hau; Wen Zhang; Antón Vila-Sanjurjo; James M Holton; Jamie H Doudna Cate
Journal:  Science       Date:  2005-11-04       Impact factor: 47.728

Review 4.  Structural insights into translational fidelity.

Authors:  James M Ogle; V Ramakrishnan
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

5.  Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.

Authors:  Fabrice Jossinet; Eric Westhof
Journal:  Bioinformatics       Date:  2005-05-19       Impact factor: 6.937

6.  RNAshapes: an integrated RNA analysis package based on abstract shapes.

Authors:  Peter Steffen; Björn Voss; Marc Rehmsmeier; Jens Reeder; Robert Giegerich
Journal:  Bioinformatics       Date:  2005-12-15       Impact factor: 6.937

7.  SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields.

Authors:  J Frank; M Radermacher; P Penczek; J Zhu; Y Li; M Ladjadj; A Leith
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

8.  The 80S rat liver ribosome at 25 A resolution by electron cryomicroscopy and angular reconstitution.

Authors:  P Dube; M Wieske; H Stark; M Schatz; J Stahl; F Zemlin; G Lutsch; M van Heel
Journal:  Structure       Date:  1998-03-15       Impact factor: 5.006

9.  An rRNA variable region has an evolutionarily conserved essential role despite sequence divergence.

Authors:  R Sweeney; L Chen; M C Yao
Journal:  Mol Cell Biol       Date:  1994-06       Impact factor: 4.272

10.  Native 3D structure of eukaryotic 80s ribosome: morphological homology with E. coli 70S ribosome.

Authors:  A Verschoor; S Srivastava; R Grassucci; J Frank
Journal:  J Cell Biol       Date:  1996-05       Impact factor: 10.539

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  100 in total

1.  Excited states of ribosome translocation revealed through integrative molecular modeling.

Authors:  Paul C Whitford; Aqeel Ahmed; Yanan Yu; Scott P Hennelly; Florence Tama; Christian M T Spahn; José N Onuchic; Karissa Y Sanbonmatsu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-11       Impact factor: 11.205

Review 2.  One core, two shells: bacterial and eukaryotic ribosomes.

Authors:  Sergey Melnikov; Adam Ben-Shem; Nicolas Garreau de Loubresse; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

3.  Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolution.

Authors:  Basil J Greber; Daniel Boehringer; Vlatka Godinic-Mikulcic; Ana Crnkovic; Michael Ibba; Ivana Weygand-Durasevic; Nenad Ban
Journal:  J Mol Biol       Date:  2012-01-27       Impact factor: 5.469

4.  Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates.

Authors:  Bethany S Strunk; Cherisse R Loucks; Min Su; Harish Vashisth; Shanshan Cheng; Justin Schilling; Charles L Brooks; Katrin Karbstein; Georgios Skiniotis
Journal:  Science       Date:  2011-08-11       Impact factor: 47.728

Review 5.  Single-particle cryo-electron microscopy of macromolecular complexes.

Authors:  Georgios Skiniotis; Daniel R Southworth
Journal:  Microscopy (Oxf)       Date:  2015-11-25       Impact factor: 1.571

6.  History of the ribosome and the origin of translation.

Authors:  Anton S Petrov; Burak Gulen; Ashlyn M Norris; Nicholas A Kovacs; Chad R Bernier; Kathryn A Lanier; George E Fox; Stephen C Harvey; Roger M Wartell; Nicholas V Hud; Loren Dean Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

Review 7.  Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Authors:  Michael Gamalinda; John L Woolford
Journal:  Translation (Austin)       Date:  2015-02-02

Review 8.  Eukaryote-specific extensions in ribosomal proteins of the small subunit: Structure and function.

Authors:  Arnab Ghosh; Anton A Komar
Journal:  Translation (Austin)       Date:  2015-02-05

Review 9.  Ribosome Biogenesis in Plants: From Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors.

Authors:  Julio Sáez-Vásquez; Michel Delseny
Journal:  Plant Cell       Date:  2019-06-25       Impact factor: 11.277

10.  Translational Regulation of Cytoplasmic mRNAs.

Authors:  Bijoyita Roy; Albrecht G von Arnim
Journal:  Arabidopsis Book       Date:  2013-07-18
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