Literature DB >> 29880918

Cryo-EM in drug discovery: achievements, limitations and prospects.

Jean-Paul Renaud1,2,3, Ashwin Chari4, Claudio Ciferri5, Wen-Ti Liu1, Hervé-William Rémigy6, Holger Stark4, Christian Wiesmann7.   

Abstract

Cryo-electron microscopy (cryo-EM) of non-crystalline single particles is a biophysical technique that can be used to determine the structure of biological macromolecules and assemblies. Historically, its potential for application in drug discovery has been heavily limited by two issues: the minimum size of the structures it can be used to study and the resolution of the images. However, recent technological advances - including the development of direct electron detectors and more effective computational image analysis techniques - are revolutionizing the utility of cryo-EM, leading to a burst of high-resolution structures of large macromolecular assemblies. These advances have raised hopes that single-particle cryo-EM might soon become an important tool for drug discovery, particularly if they could enable structural determination for 'intractable' targets that are still not accessible to X-ray crystallographic analysis. This article describes the recent advances in the field and critically assesses their relevance for drug discovery as well as discussing at what stages of the drug discovery pipeline cryo-EM can be useful today and what to expect in the near future.

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Year:  2018        PMID: 29880918     DOI: 10.1038/nrd.2018.77

Source DB:  PubMed          Journal:  Nat Rev Drug Discov        ISSN: 1474-1776            Impact factor:   84.694


  275 in total

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Journal:  J Struct Biol       Date:  1996-10       Impact factor: 2.867

2.  Cryo-EM Captures the Dynamics of Ion Channel Opening.

Authors:  John L Rubinstein
Journal:  Cell       Date:  2017-01-26       Impact factor: 41.582

3.  Molecular architecture of the human U4/U6.U5 tri-snRNP.

Authors:  Dmitry E Agafonov; Berthold Kastner; Olexandr Dybkov; Romina V Hofele; Wen-Ti Liu; Henning Urlaub; Reinhard Lührmann; Holger Stark
Journal:  Science       Date:  2016-02-18       Impact factor: 47.728

4.  3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage.

Authors:  Jingdong Cheng; Nikola Kellner; Otto Berninghausen; Ed Hurt; Roland Beckmann
Journal:  Nat Struct Mol Biol       Date:  2017-10-02       Impact factor: 15.369

5.  Cryo-EM Structures of the Magnesium Channel CorA Reveal Symmetry Break upon Gating.

Authors:  Doreen Matthies; Olivier Dalmas; Mario J Borgnia; Pawel K Dominik; Alan Merk; Prashant Rao; Bharat G Reddy; Shahidul Islam; Alberto Bartesaghi; Eduardo Perozo; Sriram Subramaniam
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

6.  Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome.

Authors:  Dario Oliveira Passos; Min Li; Renbin Yang; Stephanie V Rebensburg; Rodolfo Ghirlando; Youngmin Jeon; Nikoloz Shkriabai; Mamuka Kvaratskhelia; Robert Craigie; Dmitry Lyumkis
Journal:  Science       Date:  2017-01-06       Impact factor: 47.728

7.  Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

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Journal:  J Mol Biol       Date:  1990-06-20       Impact factor: 5.469

8.  Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site.

Authors:  Harry B Gristick; Lotta von Boehmer; Anthony P West; Michael Schamber; Anna Gazumyan; Jovana Golijanin; Michael S Seaman; Gerd Fätkenheuer; Florian Klein; Michel C Nussenzweig; Pamela J Bjorkman
Journal:  Nat Struct Mol Biol       Date:  2016-09-12       Impact factor: 15.369

9.  Fluorine-NMR experiments for high-throughput screening: theoretical aspects, practical considerations, and range of applicability.

Authors:  Claudio Dalvit; Paul E Fagerness; Daneen T A Hadden; Ronald W Sarver; Brian J Stockman
Journal:  J Am Chem Soc       Date:  2003-06-25       Impact factor: 15.419

10.  EMBuilder: A Template Matching-based Automatic Model-building Program for High-resolution Cryo-Electron Microscopy Maps.

Authors:  Niyun Zhou; Hongwei Wang; Jiawei Wang
Journal:  Sci Rep       Date:  2017-06-01       Impact factor: 4.379

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  78 in total

Review 1.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

2.  Large-Scale Molecular Dynamics Simulations of Cellular Compartments.

Authors:  Eric Wilson; John Vant; Jacob Layton; Ryan Boyd; Hyungro Lee; Matteo Turilli; Benjamín Hernández; Sean Wilkinson; Shantenu Jha; Chitrak Gupta; Daipayan Sarkar; Abhishek Singharoy
Journal:  Methods Mol Biol       Date:  2021

Review 3.  The role of small-angle scattering in structure-based screening applications.

Authors:  Po-Chia Chen; Janosch Hennig
Journal:  Biophys Rev       Date:  2018-10-10

4.  Cryo-electron microscopy shapes up.

Authors:  Monya Baker
Journal:  Nature       Date:  2018-09       Impact factor: 49.962

Review 5.  Present and Emerging Methodologies in Cryo-EM Single-Particle Analysis.

Authors:  Mengyu Wu; Gabriel C Lander
Journal:  Biophys J       Date:  2020-09-01       Impact factor: 4.033

Review 6.  An outlook on using serial femtosecond crystallography in drug discovery.

Authors:  Alexey Mishin; Anastasiia Gusach; Aleksandra Luginina; Egor Marin; Valentin Borshchevskiy; Vadim Cherezov
Journal:  Expert Opin Drug Discov       Date:  2019-06-11       Impact factor: 6.098

Review 7.  GPCR drug discovery: integrating solution NMR data with crystal and cryo-EM structures.

Authors:  Ichio Shimada; Takumi Ueda; Yutaka Kofuku; Matthew T Eddy; Kurt Wüthrich
Journal:  Nat Rev Drug Discov       Date:  2018-11-09       Impact factor: 84.694

8.  High-resolution T1 MRI via renally clearable dextran nanoparticles with an iron oxide shell.

Authors:  Tae-Hyun Shin; Pan Ki Kim; Sunghwi Kang; Jiyong Cheong; Soojin Kim; Yongjun Lim; Wookjin Shin; Joon-Yong Jung; Jungsu D Lah; Byoung Wook Choi; Jinwoo Cheon
Journal:  Nat Biomed Eng       Date:  2021-03-08       Impact factor: 25.671

9.  Emerging Diversity in Lipid-Protein Interactions.

Authors:  Valentina Corradi; Besian I Sejdiu; Haydee Mesa-Galloso; Haleh Abdizadeh; Sergei Yu Noskov; Siewert J Marrink; D Peter Tieleman
Journal:  Chem Rev       Date:  2019-02-13       Impact factor: 60.622

10.  Direct stimulation of adenylyl cyclase 9 by the fungicide imidazole miconazole.

Authors:  James Simpson; Adrienn Pálvölgyi; Ferenc A Antoni
Journal:  Naunyn Schmiedebergs Arch Pharmacol       Date:  2019-01-03       Impact factor: 3.000

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