Literature DB >> 28138072

Eukaryotic aspects of translation initiation brought into focus.

Christopher H S Aylett1, Nenad Ban2.   

Abstract

In all organisms, mRNA-directed protein synthesis is catalysed by ribosomes. Although the basic aspects of translation are preserved in all kingdoms of life, important differences are found in the process of translation initiation, which is rate-limiting and the most important step for translation regulation. While great strides had been taken towards a complete structural understanding of the initiation of translation in eubacteria, our understanding of the eukaryotic process, which includes numerous eukaryotic-specific initiation factors, was until recently limited owing to a lack of structural information. In this review, we discuss recent results in the field that provide an increasingly complete molecular description of the eukaryotic initiation process. The structural snapshots obtained using a range of methods now provide insights into the architecture of the initiation complex, start-codon recognition by the initiator tRNA and the process of subunit joining. Future advances will require both higher-resolution insights into previously characterized complexes and mapping of initiation factors that control translation on an additional level by interacting only peripherally or transiently with ribosomal subunits.This article is part of the themed issue 'Perspectives on the ribosome'.
© 2017 The Author(s).

Keywords:  eukaryotic translation; initiation factor; ribosome; scaffold; scanning; translation initiation

Mesh:

Substances:

Year:  2017        PMID: 28138072      PMCID: PMC5311930          DOI: 10.1098/rstb.2016.0186

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  29 in total

1.  A multifactor complex of eukaryotic initiation factors, eIF1, eIF2, eIF3, eIF5, and initiator tRNA(Met) is an important translation initiation intermediate in vivo.

Authors:  K Asano; J Clayton; A Shalev; A G Hinnebusch
Journal:  Genes Dev       Date:  2000-10-01       Impact factor: 11.361

2.  Structure of a yeast 40S-eIF1-eIF1A-eIF3-eIF3j initiation complex.

Authors:  Christopher H S Aylett; Daniel Boehringer; Jan P Erzberger; Tanja Schaefer; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

Review 3.  Structural insights into eukaryotic ribosomes and the initiation of translation.

Authors:  Felix Voigts-Hoffmann; Sebastian Klinge; Nenad Ban
Journal:  Curr Opin Struct Biol       Date:  2012-08-10       Impact factor: 6.809

4.  An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.

Authors:  Florian K M Schur; Martin Obr; Wim J H Hagen; William Wan; Arjen J Jakobi; Joanna M Kirkpatrick; Carsten Sachse; Hans-Georg Kräusslich; John A G Briggs
Journal:  Science       Date:  2016-07-14       Impact factor: 47.728

Review 5.  The scanning mechanism of eukaryotic translation initiation.

Authors:  Alan G Hinnebusch
Journal:  Annu Rev Biochem       Date:  2014-01-29       Impact factor: 23.643

6.  Molecular architecture of a eukaryotic translational initiation complex.

Authors:  Israel S Fernández; Xiao-Chen Bai; Tanweer Hussain; Ann C Kelley; Jon R Lorsch; V Ramakrishnan; Sjors H W Scheres
Journal:  Science       Date:  2013-11-07       Impact factor: 47.728

Review 7.  'Ribozoomin'--translation initiation from the perspective of the ribosome-bound eukaryotic initiation factors (eIFs).

Authors:  Leos Shivaya Valásek
Journal:  Curr Protein Pept Sci       Date:  2012-06       Impact factor: 3.272

8.  Structure of mammalian eIF3 in the context of the 43S preinitiation complex.

Authors:  Amedee des Georges; Vidya Dhote; Lauriane Kuhn; Christopher U T Hellen; Tatyana V Pestova; Joachim Frank; Yaser Hashem
Journal:  Nature       Date:  2015-09-07       Impact factor: 49.962

9.  Hepatitis-C-virus-like internal ribosome entry sites displace eIF3 to gain access to the 40S subunit.

Authors:  Yaser Hashem; Amedee des Georges; Vidya Dhote; Robert Langlois; Hstau Y Liao; Robert A Grassucci; Tatyana V Pestova; Christopher U T Hellen; Joachim Frank
Journal:  Nature       Date:  2013-11-03       Impact factor: 49.962

10.  Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex.

Authors:  Jan P Erzberger; Florian Stengel; Riccardo Pellarin; Suyang Zhang; Tanja Schaefer; Christopher H S Aylett; Peter Cimermančič; Daniel Boehringer; Andrej Sali; Ruedi Aebersold; Nenad Ban
Journal:  Cell       Date:  2014-08-28       Impact factor: 41.582

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  12 in total

1.  Perspectives on the ribosome.

Authors:  Thomas A Steitz; Peter B Moore
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-03-19       Impact factor: 6.237

2.  A Drosophila Model of Intellectual Disability Caused by Mutations in the Histone Demethylase KDM5.

Authors:  Sumaira Zamurrad; Hayden A M Hatch; Coralie Drelon; Helen M Belalcazar; Julie Secombe
Journal:  Cell Rep       Date:  2018-02-27       Impact factor: 9.423

3.  Phosphorylation and interactions associated with the control of the Leishmania Poly-A Binding Protein 1 (PABP1) function during translation initiation.

Authors:  Osvaldo P de Melo Neto; Tamara D C da Costa Lima; Kleison C Merlo; Tatiany P Romão; Pollyanna O Rocha; Ludmila A Assis; Larissa M Nascimento; Camila C Xavier; Antonio M Rezende; Christian R S Reis; Barbara Papadopoulou
Journal:  RNA Biol       Date:  2018-03-23       Impact factor: 4.652

4.  Translational initiation factor eIF5 replaces eIF1 on the 40S ribosomal subunit to promote start-codon recognition.

Authors:  Jose Luis Llácer; Tanweer Hussain; Adesh K Saini; Jagpreet Singh Nanda; Sukhvir Kaur; Yuliya Gordiyenko; Rakesh Kumar; Alan G Hinnebusch; Jon R Lorsch; V Ramakrishnan
Journal:  Elife       Date:  2018-11-30       Impact factor: 8.140

5.  Variants of the 5'-terminal region of p53 mRNA influence the ribosomal scanning and translation efficiency.

Authors:  Paulina Zydowicz-Machtel; Agata Swiatkowska; Łukasz Popenda; Agnieszka Gorska; Jerzy Ciesiołka
Journal:  Sci Rep       Date:  2018-01-24       Impact factor: 4.379

Review 6.  Control of Translation at the Initiation Phase During Glucose Starvation in Yeast.

Authors:  Yoshika Janapala; Thomas Preiss; Nikolay E Shirokikh
Journal:  Int J Mol Sci       Date:  2019-08-19       Impact factor: 5.923

7.  The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs.

Authors:  Francisco Acosta-Reyes; Ritam Neupane; Joachim Frank; Israel S Fernández
Journal:  EMBO J       Date:  2019-10-14       Impact factor: 11.598

8.  Functional characterization of 5' UTR cis-acting sequence elements that modulate translational efficiency in Plasmodium falciparum and humans.

Authors:  Valentina E Garcia; Rebekah Dial; Joseph L DeRisi
Journal:  Malar J       Date:  2022-01-06       Impact factor: 2.979

9.  Large-scale movement of eIF3 domains during translation initiation modulate start codon selection.

Authors:  Jose L Llácer; Tanweer Hussain; Jinsheng Dong; Laura Villamayor; Yuliya Gordiyenko; Alan G Hinnebusch
Journal:  Nucleic Acids Res       Date:  2021-11-18       Impact factor: 16.971

10.  How Many Messenger RNAs Can Be Translated by the START Mechanism?

Authors:  Laurence Despons; Franck Martin
Journal:  Int J Mol Sci       Date:  2020-11-08       Impact factor: 5.923

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