Literature DB >> 22096102

The structure of the eukaryotic ribosome at 3.0 Å resolution.

Adam Ben-Shem1, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov.   

Abstract

Ribosomes translate genetic information encoded by messenger RNA into proteins. Many aspects of translation and its regulation are specific to eukaryotes, whose ribosomes are much larger and intricate than their bacterial counterparts. We report the crystal structure of the 80S ribosome from the yeast Saccharomyces cerevisiae--including nearly all ribosomal RNA bases and protein side chains as well as an additional protein, Stm1--at a resolution of 3.0 angstroms. This atomic model reveals the architecture of eukaryote-specific elements and their interaction with the universally conserved core, and describes all eukaryote-specific bridges between the two ribosomal subunits. It forms the structural framework for the design and analysis of experiments that explore the eukaryotic translation apparatus and the evolutionary forces that shaped it.

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Year:  2011        PMID: 22096102     DOI: 10.1126/science.1212642

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  561 in total

Review 1.  One core, two shells: bacterial and eukaryotic ribosomes.

Authors:  Sergey Melnikov; Adam Ben-Shem; Nicolas Garreau de Loubresse; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

Review 2.  A mechanistic overview of translation initiation in eukaryotes.

Authors:  Colin Echeverría Aitken; Jon R Lorsch
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

3.  RNA degradation paths in a 12-subunit nuclear exosome complex.

Authors:  Debora Lika Makino; Benjamin Schuch; Elisabeth Stegmann; Marc Baumgärtner; Claire Basquin; Elena Conti
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

4.  Dom34 rescues ribosomes in 3' untranslated regions.

Authors:  Nicholas R Guydosh; Rachel Green
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

5.  Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex.

Authors:  Derek Taylor; Anett Unbehaun; Wen Li; Sanchaita Das; Jianlin Lei; Hstau Y Liao; Robert A Grassucci; Tatyana V Pestova; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

6.  Growth inhibitory effects of large subunit ribosomal proteins in melanoma.

Authors:  Gregory R Kardos; Mu-Shui Dai; Gavin P Robertson
Journal:  Pigment Cell Melanoma Res       Date:  2014-06-16       Impact factor: 4.693

7.  Nucleobases Undergo Dynamic Rearrangements during RNA Tertiary Folding.

Authors:  Robb Welty; Kathleen B Hall
Journal:  J Mol Biol       Date:  2016-09-29       Impact factor: 5.469

8.  Hydroxylation of the eukaryotic ribosomal decoding center affects translational accuracy.

Authors:  Christoph Loenarz; Rok Sekirnik; Armin Thalhammer; Wei Ge; Ekaterina Spivakovsky; Mukram M Mackeen; Michael A McDonough; Matthew E Cockman; Benedikt M Kessler; Peter J Ratcliffe; Alexander Wolf; Christopher J Schofield
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

9.  Structural and functional studies of Bud23-Trm112 reveal 18S rRNA N7-G1575 methylation occurs on late 40S precursor ribosomes.

Authors:  Juliette Létoquart; Emmeline Huvelle; Ludivine Wacheul; Gabrielle Bourgeois; Christiane Zorbas; Marc Graille; Valérie Heurgué-Hamard; Denis L J Lafontaine
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

10.  Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under Stress.

Authors:  Songhee Back; Andrew W Gorman; Christine Vogel; Gustavo M Silva
Journal:  J Proteome Res       Date:  2018-12-10       Impact factor: 4.466

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