Literature DB >> 28368393

Structure of the 40S-ABCE1 post-splitting complex in ribosome recycling and translation initiation.

André Heuer1, Milan Gerovac2, Christian Schmidt1, Simon Trowitzsch2, Anne Preis1, Peter Kötter3, Otto Berninghausen1, Thomas Becker1, Roland Beckmann1, Robert Tampé2.   

Abstract

The essential ATP-binding cassette protein ABCE1 splits 80S ribosomes into 60S and 40S subunits after canonical termination or quality-control-based mRNA surveillance processes. However, the underlying splitting mechanism remains enigmatic. Here, we present a cryo-EM structure of the yeast 40S-ABCE1 post-splitting complex at 3.9-Å resolution. Compared to the pre-splitting state, we observe repositioning of ABCE1's iron-sulfur cluster domain, which rotates 150° into a binding pocket on the 40S subunit. This repositioning explains a newly observed anti-association activity of ABCE1. Notably, the movement implies a collision with A-site factors, thus explaining the splitting mechanism. Disruption of key interactions in the post-splitting complex impairs cellular homeostasis. Additionally, the structure of a native post-splitting complex reveals ABCE1 to be part of the 43S initiation complex, suggesting a coordination of termination, recycling, and initiation.

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Year:  2017        PMID: 28368393     DOI: 10.1038/nsmb.3396

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  55 in total

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Review 2.  eIF3: a versatile scaffold for translation initiation complexes.

Authors:  Alan G Hinnebusch
Journal:  Trends Biochem Sci       Date:  2006-08-22       Impact factor: 13.807

3.  The essential Drosophila ATP-binding cassette domain protein, pixie, binds the 40 S ribosome in an ATP-dependent manner and is required for translation initiation.

Authors:  Ditte S Andersen; Sally J Leevers
Journal:  J Biol Chem       Date:  2007-03-28       Impact factor: 5.157

4.  X-ray structure of the complete ABC enzyme ABCE1 from Pyrococcus abyssi.

Authors:  Annette Karcher; Alexandra Schele; Karl-Peter Hopfner
Journal:  J Biol Chem       Date:  2007-12-26       Impact factor: 5.157

5.  Structure of a yeast 40S-eIF1-eIF1A-eIF3-eIF3j initiation complex.

Authors:  Christopher H S Aylett; Daniel Boehringer; Jan P Erzberger; Tanja Schaefer; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

6.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

7.  ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer.

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Journal:  Mol Cell       Date:  2002-07       Impact factor: 17.970

8.  Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome.

Authors:  Israel S Fernández; Xiao-Chen Bai; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Cell       Date:  2014-05-01       Impact factor: 41.582

9.  MolProbity: all-atom structure validation for macromolecular crystallography.

Authors:  Vincent B Chen; W Bryan Arendall; Jeffrey J Headd; Daniel A Keedy; Robert M Immormino; Gary J Kapral; Laura W Murray; Jane S Richardson; David C Richardson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

10.  Structural basis for stop codon recognition in eukaryotes.

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Journal:  Nature       Date:  2015-08-05       Impact factor: 49.962

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  37 in total

Review 1.  Biogenesis and functions of mammalian iron-sulfur proteins in the regulation of iron homeostasis and pivotal metabolic pathways.

Authors:  Tracey A Rouault; Nunziata Maio
Journal:  J Biol Chem       Date:  2017-06-14       Impact factor: 5.157

Review 2.  Nonsense-Mediated mRNA Decay Begins Where Translation Ends.

Authors:  Evangelos D Karousis; Oliver Mühlemann
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

3.  Tma64/eIF2D, Tma20/MCT-1, and Tma22/DENR Recycle Post-termination 40S Subunits In Vivo.

Authors:  David J Young; Desislava S Makeeva; Fan Zhang; Aleksandra S Anisimova; Elena A Stolboushkina; Fardin Ghobakhlou; Ivan N Shatsky; Sergey E Dmitriev; Alan G Hinnebusch; Nicholas R Guydosh
Journal:  Mol Cell       Date:  2018-08-23       Impact factor: 17.970

4.  The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process.

Authors:  Yaser Hashem; Joachim Frank
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

Review 5.  Does eIF3 promote reinitiation after translation of short upstream ORFs also in mammalian cells?

Authors:  Vladislava Hronová; Mahabub Pasha Mohammad; Susan Wagner; Josef Pánek; Stanislava Gunišová; Jakub Zeman; Kristýna Poncová; Leoš Shivaya Valášek
Journal:  RNA Biol       Date:  2017-09-15       Impact factor: 4.652

6.  Mechanisms that ensure speed and fidelity in eukaryotic translation termination.

Authors:  Michael R Lawson; Laura N Lessen; Jinfan Wang; Arjun Prabhakar; Nicholas C Corsepius; Rachel Green; Joseph D Puglisi
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7.  Pervasive translation of circular RNAs driven by short IRES-like elements.

Authors:  Xiaojuan Fan; Yun Yang; Chuyun Chen; Zefeng Wang
Journal:  Nat Commun       Date:  2022-06-29       Impact factor: 17.694

Review 8.  Roadblocks and resolutions in eukaryotic translation.

Authors:  Anthony P Schuller; Rachel Green
Journal:  Nat Rev Mol Cell Biol       Date:  2018-08       Impact factor: 94.444

Review 9.  Diversity and Similarity of Termination and Ribosome Rescue in Bacterial, Mitochondrial, and Cytoplasmic Translation.

Authors:  Andrei A Korostelev
Journal:  Biochemistry (Mosc)       Date:  2021-09       Impact factor: 2.487

10.  Elongational stalling activates mitoribosome-associated quality control.

Authors:  Nirupa Desai; Hanting Yang; Viswanathan Chandrasekaran; Razina Kazi; Michal Minczuk; V Ramakrishnan
Journal:  Science       Date:  2020-11-27       Impact factor: 47.728

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