Literature DB >> 23016824

Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs.

Kirill A Afonin1, Maria Kireeva, Wade W Grabow, Mikhail Kashlev, Luc Jaeger, Bruce A Shapiro.   

Abstract

We report a generalized methodology for the one-pot production of chemically modified functional RNA nanoparticles during in vitro transcription with T7 RNA polymerase. The efficiency of incorporation of 2'-fluoro-dNTP in the transcripts by the wild type T7 RNA polymerase dramatically increases in the presence of manganese ions, resulting in a high-yield production of chemically modified RNA nanoparticles functionalized with siRNAs that are resistant to nucleases from human blood serum. Moreover, the unpurified transcription mixture can be used for functional ex vivo pilot experiments.

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Year:  2012        PMID: 23016824      PMCID: PMC3498980          DOI: 10.1021/nl302302e

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  17 in total

Review 1.  The architectonics of programmable RNA and DNA nanostructures.

Authors:  Luc Jaeger; Arkadiusz Chworos
Journal:  Curr Opin Struct Biol       Date:  2006-07-14       Impact factor: 6.809

2.  Computational design of an RNA hexagonal nanoring and an RNA nanotube.

Authors:  Yaroslava G Yingling; Bruce A Shapiro
Journal:  Nano Lett       Date:  2007-07-06       Impact factor: 11.189

3.  Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes.

Authors:  Wade W Grabow; Paul Zakrevsky; Kirill A Afonin; Arkadiusz Chworos; Bruce A Shapiro; Luc Jaeger
Journal:  Nano Lett       Date:  2011-01-13       Impact factor: 11.189

4.  Fabrication of stable and RNase-resistant RNA nanoparticles active in gearing the nanomotors for viral DNA packaging.

Authors:  Jing Liu; Songchuan Guo; Mathieu Cinier; Luda S Shlyakhtenko; Yi Shu; Chaoping Chen; Guanxin Shen; Peixuan Guo
Journal:  ACS Nano       Date:  2010-12-14       Impact factor: 15.881

Review 5.  The emerging field of RNA nanotechnology.

Authors:  Peixuan Guo
Journal:  Nat Nanotechnol       Date:  2010-11-21       Impact factor: 39.213

6.  A polyhedron made of tRNAs.

Authors:  Isil Severcan; Cody Geary; Arkadiusz Chworos; Neil Voss; Erica Jacovetty; Luc Jaeger
Journal:  Nat Chem       Date:  2010-07-18       Impact factor: 24.427

7.  In vitro assembly of cubic RNA-based scaffolds designed in silico.

Authors:  Kirill A Afonin; Eckart Bindewald; Alan J Yaghoubian; Neil Voss; Erica Jacovetty; Bruce A Shapiro; Luc Jaeger
Journal:  Nat Nanotechnol       Date:  2010-08-29       Impact factor: 39.213

8.  TokenRNA: a new type of sequence-specific, label-free fluorescent biosensor for folded RNA molecules.

Authors:  Kirill A Afonin; Evgeny O Danilov; Irina V Novikova; Neocles B Leontis
Journal:  Chembiochem       Date:  2008-08-11       Impact factor: 3.164

9.  A boost for the emerging field of RNA nanotechnology.

Authors:  Girish C Shukla; Farzin Haque; Yitzhak Tor; L Marcus Wilhelmsson; Jean-Jacques Toulmé; Hervé Isambert; Peixuan Guo; John J Rossi; Scott A Tenenbaum; Bruce A Shapiro
Journal:  ACS Nano       Date:  2011-05-24       Impact factor: 15.881

10.  Functional polarity is introduced by Dicer processing of short substrate RNAs.

Authors:  Scott D Rose; Dong-Ho Kim; Mohammed Amarzguioui; Jeremy D Heidel; Michael A Collingwood; Mark E Davis; John J Rossi; Mark A Behlke
Journal:  Nucleic Acids Res       Date:  2005-07-26       Impact factor: 16.971

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  47 in total

1.  Bolaamphiphiles as carriers for siRNA delivery: From chemical syntheses to practical applications.

Authors:  Kshitij Gupta; Kirill A Afonin; Mathias Viard; Virginia Herrero; Wojciech Kasprzak; Ioannis Kagiampakis; Taejin Kim; Alexey Y Koyfman; Anu Puri; Marissa Stepler; Alison Sappe; Vineet N KewalRamani; Sarina Grinberg; Charles Linder; Eliahu Heldman; Robert Blumenthal; Bruce A Shapiro
Journal:  J Control Release       Date:  2015-07-04       Impact factor: 9.776

2.  Cotranscriptional Production of Chemically Modified RNA Nanoparticles.

Authors:  Maria L Kireeva; Kirill A Afonin; Bruce A Shapiro; Mikhail Kashlev
Journal:  Methods Mol Biol       Date:  2017

3.  One-Pot Production of RNA Nanoparticles via Automated Processing and Self-Assembly.

Authors:  Daniel L Jasinski; Daniel W Binzel; Peixuan Guo
Journal:  ACS Nano       Date:  2019-03-22       Impact factor: 15.881

4.  The Use of Minimal RNA Toeholds to Trigger the Activation of Multiple Functionalities.

Authors:  Kirill A Afonin; Mathias Viard; Philip Tedbury; Eckart Bindewald; Lorena Parlea; Marshall Howington; Melissa Valdman; Alizah Johns-Boehme; Cara Brainerd; Eric O Freed; Bruce A Shapiro
Journal:  Nano Lett       Date:  2016-02-29       Impact factor: 11.189

5.  RNA and DNA nanoparticles for triggering RNA interference.

Authors:  Ziad El Tannir; Kirill A Afonin; Bruce A Shapiro
Journal:  RNA Dis       Date:  2015-11-29

6.  Challenges to optimizing RNA nanostructures for large scale production and controlled therapeutic properties.

Authors:  Morgan Chandler; Martin Panigaj; Lewis A Rolband; Kirill A Afonin
Journal:  Nanomedicine (Lond)       Date:  2020-05-26       Impact factor: 5.307

7.  Dynamic Behavior of RNA Nanoparticles Analyzed by AFM on a Mica/Air Interface.

Authors:  Sameer Sajja; Morgan Chandler; Dmitry Fedorov; Wojciech K Kasprzak; Alexander Lushnikov; Mathias Viard; Ankit Shah; Dylan Dang; Jared Dahl; Beamlak Worku; Marina A Dobrovolskaia; Alexey Krasnoslobodtsev; Bruce A Shapiro; Kirill A Afonin
Journal:  Langmuir       Date:  2018-04-30       Impact factor: 3.882

Review 8.  RNA interference for glioblastoma therapy: Innovation ladder from the bench to clinical trials.

Authors:  Eunice L Lozada-Delgado; Nilmary Grafals-Ruiz; Pablo E Vivas-Mejía
Journal:  Life Sci       Date:  2017-08-31       Impact factor: 5.037

9.  RNAi Screening of the Glucose-Regulated Chaperones in Cancer with Self-Assembled siRNA Nanostructures.

Authors:  Mayurbhai R Patel; Stephen D Kozuch; Christopher N Cultrara; Reeta Yadav; Suiying Huang; Uri Samuni; John Koren; Gabriela Chiosis; David Sabatino
Journal:  Nano Lett       Date:  2016-10-03       Impact factor: 11.189

Review 10.  Cellular Delivery of RNA Nanoparticles.

Authors:  Lorena Parlea; Anu Puri; Wojciech Kasprzak; Eckart Bindewald; Paul Zakrevsky; Emily Satterwhite; Kenya Joseph; Kirill A Afonin; Bruce A Shapiro
Journal:  ACS Comb Sci       Date:  2016-08-26       Impact factor: 3.784

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