Literature DB >> 17616164

Computational design of an RNA hexagonal nanoring and an RNA nanotube.

Yaroslava G Yingling1, Bruce A Shapiro.   

Abstract

The combination of computer modeling, RNA structure versatility, and siRNA function can be efficiently used to design an all-RNA nanoparticle capable of siRNA delivery. Here, we present a computational design of an RNA nanoring and a nanotube. An RNA nanoring consists of six simple linear building blocks that are assembled together via known noncovalent loop-loop contacts based on RNAI/RNAII inverse sequences. The helical sequences of the building blocks can include siRNAs for drug delivery.

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Year:  2007        PMID: 17616164     DOI: 10.1021/nl070984r

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  49 in total

1.  Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots.

Authors:  Eckart Bindewald; Kirill Afonin; Luc Jaeger; Bruce A Shapiro
Journal:  ACS Nano       Date:  2011-11-17       Impact factor: 15.881

2.  RNA nanotechnology for computer design and in vivo computation.

Authors:  Meikang Qiu; Emil Khisamutdinov; Zhengyi Zhao; Cheryl Pan; Jeong-Woo Choi; Neocles B Leontis; Peixuan Guo
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2013-09-02       Impact factor: 4.226

3.  Interactions of cations with RNA loop-loop complexes.

Authors:  Abhishek Singh; Latsavongsakda Sethaphong; Yaroslava G Yingling
Journal:  Biophys J       Date:  2011-08-03       Impact factor: 4.033

4.  Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes.

Authors:  Wade W Grabow; Paul Zakrevsky; Kirill A Afonin; Arkadiusz Chworos; Bruce A Shapiro; Luc Jaeger
Journal:  Nano Lett       Date:  2011-01-13       Impact factor: 11.189

5.  Intracellular Reassociation of RNA-DNA Hybrids that Activates RNAi in HIV-Infected Cells.

Authors:  Angelica N Martins; Weina Ke; Vaishnavi Jawahar; Morriah Striplin; Caryn Striplin; Eric O Freed; Kirill A Afonin
Journal:  Methods Mol Biol       Date:  2017

Review 6.  Uniqueness, advantages, challenges, solutions, and perspectives in therapeutics applying RNA nanotechnology.

Authors:  Peixuan Guo; Farzin Haque; Brent Hallahan; Randall Reif; Hui Li
Journal:  Nucleic Acid Ther       Date:  2012-08       Impact factor: 5.486

7.  Coarse-graining RNA nanostructures for molecular dynamics simulations.

Authors:  Maxim Paliy; Roderick Melnik; Bruce A Shapiro
Journal:  Phys Biol       Date:  2010-06-24       Impact factor: 2.583

8.  Picomolar Fingerprinting of Nucleic Acid Nanoparticles Using Solid-State Nanopores.

Authors:  Mohammad Amin Alibakhshi; Justin R Halman; James Wilson; Aleksei Aksimentiev; Kirill A Afonin; Meni Wanunu
Journal:  ACS Nano       Date:  2017-09-11       Impact factor: 15.881

Review 9.  Methods for construction and characterization of simple or special multifunctional RNA nanoparticles based on the 3WJ of phi29 DNA packaging motor.

Authors:  Sijin Guo; Xijun Piao; Hui Li; Peixuan Guo
Journal:  Methods       Date:  2018-03-09       Impact factor: 3.608

10.  Square-shaped RNA particles from different RNA folds.

Authors:  Isil Severcan; Cody Geary; Erik Verzemnieks; Arkadiusz Chworos; Luc Jaeger
Journal:  Nano Lett       Date:  2009-03       Impact factor: 11.189

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