Literature DB >> 18655086

TokenRNA: a new type of sequence-specific, label-free fluorescent biosensor for folded RNA molecules.

Kirill A Afonin1, Evgeny O Danilov, Irina V Novikova, Neocles B Leontis.   

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Year:  2008        PMID： 18655086      PMCID： PMC2837918          DOI： 10.1002/cbic.200800183

Source DB:  PubMed          Journal:  Chembiochem        ISSN： 1439-4227            Impact factor:   3.164


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  18 in total

1.  Binding to an RNA aptamer changes the charge distribution and conformation of malachite green.

Authors:  Dat H Nguyen; Steven C DeFina; William H Fink; Thorsten Dieckmann
Journal:  J Am Chem Soc       Date:  2002-12-18       Impact factor: 15.419

2.  Paranemic cohesion of topologically-closed DNA molecules.

Authors:  Xiaoping Zhang; Hao Yan; Zhiyong Shen; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2002-11-06       Impact factor: 15.419

3.  Aptamers switch on fluorescence of triphenylmethane dyes.

Authors:  Jeremy R Babendure; Stephen R Adams; Roger Y Tsien
Journal:  J Am Chem Soc       Date:  2003-12-03       Impact factor: 15.419

4.  Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex.

Authors:  Jeremy Flinders; Steven C DeFina; David M Brackett; Chris Baugh; Charles Wilson; Thorsten Dieckmann
Journal:  Chembiochem       Date:  2004-01-03       Impact factor: 3.164

5.  The non-Watson-Crick base pairs and their associated isostericity matrices.

Authors:  Neocles B Leontis; Jesse Stombaugh; Eric Westhof
Journal:  Nucleic Acids Res       Date:  2002-08-15       Impact factor: 16.971

6.  Modular aptameric sensors.

Authors:  Milan N Stojanovic; Dmitry M Kolpashchikov
Journal:  J Am Chem Soc       Date:  2004-08-04       Impact factor: 15.419

7.  Paranemic crossover DNA: a generalized Holliday structure with applications in nanotechnology.

Authors:  Zhiyong Shen; Hao Yan; Tong Wang; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2004-02-18       Impact factor: 15.419

8.  Specific RNA self-assembly with minimal paranemic motifs.

Authors:  Kirill A Afonin; Dennis J Cieply; Neocles B Leontis
Journal:  J Am Chem Soc       Date:  2007-12-12       Impact factor: 15.419

9.  2.8 A crystal structure of the malachite green aptamer.

Authors:  C Baugh; D Grate; C Wilson
Journal:  J Mol Biol       Date:  2000-08-04       Impact factor: 5.469

10.  Signaling aptamer/protein binding by a molecular light switch complex.

Authors:  Yaxin Jiang; Xiaohong Fang; Chunli Bai
Journal:  Anal Chem       Date:  2004-09-01       Impact factor: 6.986
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  26 in total

1.  Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots.

Authors:  Eckart Bindewald; Kirill Afonin; Luc Jaeger; Bruce A Shapiro
Journal:  ACS Nano       Date:  2011-11-17       Impact factor: 15.881

2.  Multistrand Structure Prediction of Nucleic Acid Assemblies and Design of RNA Switches.

Authors:  Eckart Bindewald; Kirill A Afonin; Mathias Viard; Paul Zakrevsky; Taejin Kim; Bruce A Shapiro
Journal:  Nano Lett       Date:  2016-02-29       Impact factor: 11.189

3.  Design and self-assembly of siRNA-functionalized RNA nanoparticles for use in automated nanomedicine.

Authors:  Kirill A Afonin; Wade W Grabow; Faye M Walker; Eckart Bindewald; Marina A Dobrovolskaia; Bruce A Shapiro; Luc Jaeger
Journal:  Nat Protoc       Date:  2011-12-01       Impact factor: 13.491

4.  Split Spinach Aptamer for Highly Selective Recognition of DNA and RNA at Ambient Temperatures.

Authors:  Nanami Kikuchi; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2016-07-15       Impact factor: 3.164

5.  Co-transcriptional assembly of chemically modified RNA nanoparticles functionalized with siRNAs.

Authors:  Kirill A Afonin; Maria Kireeva; Wade W Grabow; Mikhail Kashlev; Luc Jaeger; Bruce A Shapiro
Journal:  Nano Lett       Date:  2012-09-27       Impact factor: 11.189

6.  In vitro assembly of cubic RNA-based scaffolds designed in silico.

Authors:  Kirill A Afonin; Eckart Bindewald; Alan J Yaghoubian; Neil Voss; Erica Jacovetty; Bruce A Shapiro; Luc Jaeger
Journal:  Nat Nanotechnol       Date:  2010-08-29       Impact factor: 39.213

Review 7.  Cellular Delivery of RNA Nanoparticles.

Authors:  Lorena Parlea; Anu Puri; Wojciech Kasprzak; Eckart Bindewald; Paul Zakrevsky; Emily Satterwhite; Kenya Joseph; Kirill A Afonin; Bruce A Shapiro
Journal:  ACS Comb Sci       Date:  2016-08-26       Impact factor: 3.784

8.  Fabrication of pRNA nanoparticles to deliver therapeutic RNAs and bioactive compounds into tumor cells.

Authors:  Yi Shu; Dan Shu; Farzin Haque; Peixuan Guo
Journal:  Nat Protoc       Date:  2013-08-01       Impact factor: 13.491

Review 9.  RNA versatility, flexibility, and thermostability for practice in RNA nanotechnology and biomedical applications.

Authors:  Farzin Haque; Fengmei Pi; Zhengyi Zhao; Shanqing Gu; Haibo Hu; Hang Yu; Peixuan Guo
Journal:  Wiley Interdiscip Rev RNA       Date:  2017-11-03       Impact factor: 9.957

10.  Computational and experimental characterization of RNA cubic nanoscaffolds.

Authors:  Kirill A Afonin; Wojciech Kasprzak; Eckart Bindewald; Praneet S Puppala; Alex R Diehl; Kenneth T Hall; Tae Jin Kim; Michael T Zimmermann; Robert L Jernigan; Luc Jaeger; Bruce A Shapiro
Journal:  Methods       Date:  2013-11-01       Impact factor: 3.608
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